View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6351_high_4 (Length: 384)

Name: NF6351_high_4
Description: NF6351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6351_high_4
NF6351_high_4
[»] chr7 (14 HSPs)
chr7 (11-179)||(2534182-2534350)
chr7 (237-357)||(2534046-2534166)
chr7 (33-137)||(2525594-2525698)
chr7 (337-382)||(30138876-30138921)
chr7 (224-275)||(44172879-44172930)
chr7 (337-382)||(6455556-6455601)
chr7 (337-382)||(11002404-11002449)
chr7 (337-382)||(23797436-23797481)
chr7 (337-382)||(24280909-24280954)
chr7 (337-382)||(31813418-31813463)
chr7 (337-384)||(2943298-2943345)
chr7 (337-376)||(5950288-5950327)
chr7 (337-382)||(12088899-12088944)
chr7 (341-382)||(21886478-21886519)
[»] chr5 (12 HSPs)
chr5 (19-132)||(1772629-1772742)
chr5 (337-382)||(3100493-3100538)
chr5 (337-382)||(31691347-31691392)
chr5 (339-382)||(26045274-26045317)
chr5 (341-384)||(31706045-31706088)
chr5 (343-382)||(35032358-35032397)
chr5 (341-384)||(41814394-41814437)
chr5 (232-274)||(38749560-38749602)
chr5 (337-382)||(71266-71311)
chr5 (337-378)||(3100412-3100453)
chr5 (337-382)||(26141762-26141807)
chr5 (337-381)||(29177800-29177844)
[»] chr3 (18 HSPs)
chr3 (337-382)||(12744908-12744953)
chr3 (337-382)||(336073-336118)
chr3 (337-382)||(10872760-10872805)
chr3 (341-378)||(24596902-24596939)
chr3 (337-382)||(29752190-29752235)
chr3 (341-382)||(50466824-50466865)
chr3 (339-382)||(3972477-3972520)
chr3 (339-382)||(3997358-3997401)
chr3 (208-275)||(16192723-16192790)
chr3 (341-384)||(51060674-51060717)
chr3 (337-375)||(9170119-9170157)
chr3 (337-379)||(52215887-52215929)
chr3 (337-382)||(29389334-29389379)
chr3 (337-382)||(38677572-38677617)
chr3 (337-382)||(41743678-41743723)
chr3 (337-374)||(42681187-42681224)
chr3 (339-379)||(24075536-24075576)
chr3 (339-383)||(40202420-40202464)
[»] chr2 (14 HSPs)
chr2 (337-383)||(42530499-42530545)
chr2 (337-381)||(38618484-38618528)
chr2 (337-382)||(7079458-7079503)
chr2 (337-382)||(8740526-8740571)
chr2 (337-382)||(9431204-9431249)
chr2 (337-382)||(23377949-23377994)
chr2 (337-374)||(23738326-23738363)
chr2 (337-382)||(26003523-26003568)
chr2 (337-382)||(26234112-26234157)
chr2 (337-382)||(27331847-27331892)
chr2 (337-382)||(38465877-38465922)
chr2 (341-382)||(43732149-43732190)
chr2 (337-378)||(45472417-45472458)
chr2 (337-381)||(3121511-3121555)
[»] chr8 (13 HSPs)
chr8 (337-382)||(7258673-7258718)
chr8 (337-382)||(10117058-10117103)
chr8 (337-384)||(2296560-2296607)
chr8 (337-383)||(13290042-13290088)
chr8 (341-382)||(33385259-33385300)
chr8 (339-384)||(2805899-2805944)
chr8 (337-382)||(3444629-3444674)
chr8 (337-378)||(4613651-4613692)
chr8 (341-382)||(9015904-9015945)
chr8 (226-275)||(11803278-11803327)
chr8 (337-382)||(13496523-13496568)
chr8 (337-382)||(34326333-34326378)
chr8 (337-382)||(36916590-36916635)
[»] chr1 (17 HSPs)
chr1 (337-382)||(46412776-46412821)
chr1 (337-384)||(39940572-39940619)
chr1 (337-382)||(13043428-13043473)
chr1 (337-382)||(34953984-34954029)
chr1 (339-382)||(3549788-3549831)
chr1 (337-376)||(23398426-23398465)
chr1 (342-380)||(5595510-5595548)
chr1 (337-382)||(3013617-3013662)
chr1 (337-382)||(6508404-6508449)
chr1 (337-382)||(8338682-8338727)
chr1 (337-378)||(14214621-14214662)
chr1 (337-382)||(23575406-23575451)
chr1 (337-382)||(33939385-33939430)
chr1 (341-382)||(42761464-42761505)
chr1 (337-382)||(45115258-45115303)
chr1 (337-378)||(47446723-47446764)
chr1 (337-377)||(18551354-18551394)
[»] chr6 (19 HSPs)
chr6 (340-383)||(3199805-3199848)
chr6 (339-382)||(31158930-31158973)
chr6 (337-375)||(12383596-12383634)
chr6 (337-382)||(6560745-6560790)
chr6 (337-382)||(8146037-8146082)
chr6 (337-382)||(8449664-8449709)
chr6 (337-382)||(8458468-8458513)
chr6 (341-382)||(10258392-10258433)
chr6 (337-382)||(11637177-11637222)
chr6 (337-382)||(11746316-11746361)
chr6 (337-382)||(12383875-12383920)
chr6 (337-382)||(13281541-13281586)
chr6 (337-382)||(14031757-14031802)
chr6 (225-274)||(17168914-17168963)
chr6 (337-382)||(28554954-28554999)
chr6 (337-382)||(29418941-29418986)
chr6 (337-382)||(30916961-30917006)
chr6 (337-382)||(31398314-31398359)
chr6 (342-378)||(1302759-1302795)
[»] chr4 (23 HSPs)
chr4 (336-382)||(26920760-26920806)
chr4 (337-382)||(54713105-54713150)
chr4 (338-382)||(33377503-33377547)
chr4 (337-376)||(23568474-23568513)
chr4 (339-382)||(38716396-38716439)
chr4 (337-376)||(56364420-56364459)
chr4 (341-383)||(12672458-12672500)
chr4 (337-382)||(3511716-3511761)
chr4 (337-382)||(3669563-3669608)
chr4 (341-382)||(4484085-4484126)
chr4 (337-382)||(12168641-12168686)
chr4 (337-382)||(14450964-14451009)
chr4 (337-382)||(18881432-18881477)
chr4 (337-382)||(23071413-23071458)
chr4 (337-382)||(24798134-24798179)
chr4 (337-378)||(26636532-26636573)
chr4 (337-374)||(38381983-38382020)
chr4 (337-374)||(41346474-41346511)
chr4 (337-382)||(49481887-49481932)
chr4 (337-382)||(53176396-53176441)
chr4 (341-382)||(55416311-55416352)
chr4 (337-374)||(56257431-56257468)
chr4 (341-381)||(40952437-40952477)
[»] scaffold0341 (2 HSPs)
scaffold0341 (337-382)||(2427-2472)
scaffold0341 (337-382)||(10082-10127)
[»] scaffold0036 (1 HSPs)
scaffold0036 (214-275)||(9726-9787)
[»] scaffold0009 (1 HSPs)
scaffold0009 (337-382)||(7745-7790)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 2534350 - 2534182
Alignment:
Q  11 atcatcatgaatctctttggcatcctcaacaggaatctctttggtatccgtagggtcagtagtttcttctctattatctttagatacatcttgaacttcc 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  2534350 atcaacatgaatctctttggcatcctcaacaggaatctctttggtatccgtggggtcagtagtttcttctgtattatctttagatacatcttgaacttcc 2534251  T
Q  111 tctgaagaagcgttttcctctggctcaccaaaaccgtaacattaataacaacctatgaaagacactctt 179  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2534250 tctgaagaagcgttttcctctggctcaccaaaacagtaacattaataacaacctatgaaagacactctt 2534182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 2534166 - 2534046
Alignment:
Q  237 acacaaacacaaataattacattggattatgtcattttcaagaattagttaggtgtctgtagacttatatgagagtctgatgtcggtaacacgtacaccc 336  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  2534166 acacaaacacaaataattacattgaattatgtcattttcaagaattagttaggtgtctatcgacttatatgagagtctgatgtcggtaacacgtacaccc 2534067  T
Q  337 tcactattataagtaaaaact 357  Q
    |||||||||||||||||||||    
T  2534066 tcactattataagtaaaaact 2534046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 2525594 - 2525698
Alignment:
Q  33 tcctcaacaggaatctctttggtatccgtagggtcagtagtttcttctctattatctttagatacatcttgaacttcctctgaagaagcgttttcctctg 132  Q
    ||||||||| |||||||||||||||| ||||| ||||  |||||||||  ||||||||||||| ||||||||| |||||| |||  ||| ||||||||||    
T  2525594 tcctcaacatgaatctctttggtatcggtaggctcagccgtttcttctgaattatctttagattcatcttgaatttcctcagaatgagcattttcctctg 2525693  T
Q  133 gctca 137  Q
    |||||    
T  2525694 gctca 2525698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 30138921 - 30138876
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  30138921 tcactgttataagtaaaaatttacattttagattcattcaattaat 30138876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 44172879 - 44172930
Alignment:
Q  224 tgacaccaacacaacacaaacacaaataattacattggattatgtcattttc 275  Q
    ||||||||||||||||||||||||  | ||||||||| ||||||||||||||    
T  44172879 tgacaccaacacaacacaaacacatgtgattacattgaattatgtcattttc 44172930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 6455556 - 6455601
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| |||||||||||||||||||| |||||    
T  6455556 tcactattataagcaaaaatttacattttagattcattcatttaat 6455601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 11002449 - 11002404
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||    
T  11002449 tcactattataagtaaaaatctacattttagattcattcatttaat 11002404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 23797481 - 23797436
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||||||  || |||||||||||||||||||||||    
T  23797481 tcactattataagtaaaattttgcattttagattcattcaattaat 23797436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 24280954 - 24280909
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||    
T  24280954 tcactattataagtaaaaatctacattttaaattcattcaattaat 24280909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 31813418 - 31813463
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||||    
T  31813418 tcactattataaacaaaaatttacattttagattcattcaattaat 31813463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 2943345 - 2943298
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaataa 384  Q
    ||||||||||||| ||||| ||| |||||| |||||||||||||||||    
T  2943345 tcactattataagcaaaaaattatattttacattcattcaattaataa 2943298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 5950327 - 5950288
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattca 376  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  5950327 tcactattataagcaaaaactaacattttagattcattca 5950288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 12088944 - 12088899
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||||||  || ||||| |||||||||||||||||    
T  12088944 tcactattataagtaaaattttgcatttaagattcattcaattaat 12088899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 21886478 - 21886519
Alignment:
Q  341 tattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||    
T  21886478 tattataagcaaaaatttatattttagattcattcaattaat 21886519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 1772629 - 1772742
Alignment:
Q  19 gaatctctttggcatcctcaacaggaatctctttggtatccgtagggtcagtagtttcttctctattatctttagatacatcttgaacttcctctgaaga 118  Q
    ||||||||||| ||||||| ||  ||||||| |||||||| ||||| |||| ||||||||||  |||||||||||||||||||||||||||||| ||||     
T  1772629 gaatctctttgacatcctccaccagaatctcattggtatcagtaggctcagcagtttcttctgaattatctttagatacatcttgaacttcctccgaagg 1772728  T
Q  119 agcgttttcctctg 132  Q
    ||| ||||||||||    
T  1772729 agcattttcctctg 1772742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 3100538 - 3100493
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||    
T  3100538 tcactattataagtgaaaatttacattttagattcattcaattaat 3100493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 31691392 - 31691347
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||||    
T  31691392 tcactattataagtaaaaatttatatttgagattcattcaattaat 31691347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 382
Target Start/End: Original strand, 26045274 - 26045317
Alignment:
Q  339 actattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||||    
T  26045274 actattataagcaaaaatttatattttagattcattcaattaat 26045317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 31706088 - 31706045
Alignment:
Q  341 tattataagtaaaaacttacattttagattcattcaattaataa 384  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||    
T  31706088 tattataagtaaaaatttacattttaaattcatttaattaataa 31706045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 382
Target Start/End: Complemental strand, 35032397 - 35032358
Alignment:
Q  343 ttataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  35032397 ttataagcaaaaatttacattttagattcattcaattaat 35032358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 384
Target Start/End: Original strand, 41814394 - 41814437
Alignment:
Q  341 tattataagtaaaaacttacattttagattcattcaattaataa 384  Q
    ||||||| | ||||| ||||||||||||||||||||||||||||    
T  41814394 tattataggcaaaaatttacattttagattcattcaattaataa 41814437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 38749560 - 38749602
Alignment:
Q  232 acacaacacaaacacaaataattacattggattatgtcatttt 274  Q
    ||||||||| |||||| |||||||||||| |||||||||||||    
T  38749560 acacaacaccaacacatataattacattgaattatgtcatttt 38749602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 71266 - 71311
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| |||||  || ||||||||||||||||||||||    
T  71266 tcactattataagcaaaaatctatattttagattcattcaattaat 71311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 378
Target Start/End: Original strand, 3100412 - 3100453
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaat 378  Q
    ||||||||||||| ||||| | ||||||||||||||||||||    
T  3100412 tcactattataagcaaaaattaacattttagattcattcaat 3100453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 26141762 - 26141807
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||  |||||||||||||||||||| |||||    
T  26141762 tcactattataagcaaaagtttacattttagattcattcatttaat 26141807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 29177844 - 29177800
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaa 381  Q
    ||||| ||||||  ||||| |||||||||||||||||||||||||    
T  29177844 tcactgttataaacaaaaatttacattttagattcattcaattaa 29177800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 12744908 - 12744953
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  12744908 tcactattataagcaaaaacttacattttagattcattcaattaat 12744953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 336073 - 336118
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||||||  |||||||||||||||||||| |||||    
T  336073 tcactattataagtaaaagtttacattttagattcattcatttaat 336118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 10872805 - 10872760
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  10872805 tcactattataagcaaaaatttatattttagattcattcaattaat 10872760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 24596902 - 24596939
Alignment:
Q  341 tattataagtaaaaacttacattttagattcattcaat 378  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  24596902 tattataagtaaaaatttacattttagattcattcaat 24596939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 29752190 - 29752235
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||    
T  29752190 tcactattacaaataaaaaattacattttagattcattcaattaat 29752235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 50466824 - 50466865
Alignment:
Q  341 tattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  50466824 tattataagtaaaaatttatattttagattcattcaattaat 50466865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 382
Target Start/End: Original strand, 3972477 - 3972520
Alignment:
Q  339 actattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||||||| ||||||  |||||||||||||||||||||||||    
T  3972477 actattataaataaaaatctacattttagattcattcaattaat 3972520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 382
Target Start/End: Complemental strand, 3997401 - 3997358
Alignment:
Q  339 actattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||||||| ||||||  |||||||||||||||||||||||||    
T  3997401 actattataaataaaaatctacattttagattcattcaattaat 3997358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 16192723 - 16192790
Alignment:
Q  208 gacaccgtgtcgtgtctgacaccaacacaacacaaacacaaataattacattggattatgtcattttc 275  Q
    ||||| ||||||||||||||||| |||| |||  |||||| ||||||||| || ||||||| ||||||    
T  16192723 gacactgtgtcgtgtctgacaccgacacgacatcaacacatataattacactgaattatgttattttc 16192790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 384
Target Start/End: Original strand, 51060674 - 51060717
Alignment:
Q  341 tattataagtaaaaacttacattttagattcattcaattaataa 384  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||    
T  51060674 tattataagcaaaaatttacattttagattaattcaattaataa 51060717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 375
Target Start/End: Original strand, 9170119 - 9170157
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattc 375  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  9170119 tcactattataagcaaaaaattacattttagattcattc 9170157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 379
Target Start/End: Original strand, 52215887 - 52215929
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaatt 379  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||    
T  52215887 tcactattataagcaaaaatttacattttagattcatgcaatt 52215929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 29389334 - 29389379
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| ||| ||||||||||| ||||||||||    
T  29389334 tcactattataagcaaaaatttatattttagattcgttcaattaat 29389379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 38677572 - 38677617
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||  |||||||||||||||||||| |||||    
T  38677572 tcactattataagcaaaagtttacattttagattcattcatttaat 38677617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 41743723 - 41743678
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||||||  ||||||||| |||||||||| |||||    
T  41743723 tcactattataagtaaaagtttacattttggattcattcagttaat 41743678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 42681187 - 42681224
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcatt 374  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  42681187 tcactattataagtaaaaatttacattttaaattcatt 42681224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 24075576 - 24075536
Alignment:
Q  339 actattataagtaaaaacttacattttagattcattcaatt 379  Q
    ||||||||||| |||||  ||||||||||||||||||||||    
T  24075576 actattataagcaaaaatctacattttagattcattcaatt 24075536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 40202420 - 40202464
Alignment:
Q  339 actattataagtaaaaacttacattttagattcattcaattaata 383  Q
    ||||||||||| ||||| |||||||||  ||||||||||||||||    
T  40202420 actattataagcaaaaatttacattttgcattcattcaattaata 40202464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 42530499 - 42530545
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaata 383  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  42530499 tcactattataagtaaaaatttacattttagattcatttaattaata 42530545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 38618528 - 38618484
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaa 381  Q
    ||||||||||||| ||||| |||||||||| ||||||||||||||    
T  38618528 tcactattataaggaaaaatttacattttacattcattcaattaa 38618484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 7079503 - 7079458
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| |||||| || |||||||||||||| |||||||    
T  7079503 tcactattataagcaaaaacatatattttagattcatttaattaat 7079458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 8740526 - 8740571
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| |||||  ||||||||||||||||||| |||||    
T  8740526 tcactattataagcaaaaatctacattttagattcattcatttaat 8740571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 9431204 - 9431249
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||| |||||||||||| ||||||||||| |||||||| |||||    
T  9431204 tcactaatataagtaaaaaattacattttaggttcattcatttaat 9431249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 23377949 - 23377994
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||||||| |||||||  || |||||||||||||||||||||||    
T  23377949 tcactattattagtaaaactttgcattttagattcattcaattaat 23377994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 23738326 - 23738363
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcatt 374  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  23738326 tcactattataagtaaaaattgacattttagattcatt 23738363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 26003568 - 26003523
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||| ||||||| |||||  |||||||||||||||||||||||||    
T  26003568 tcacttttataagcaaaaatctacattttagattcattcaattaat 26003523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 26234157 - 26234112
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||  |||||||||||||||||||| |||||    
T  26234157 tcactattataagcaaaagtttacattttagattcattcatttaat 26234112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 27331892 - 27331847
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| |||||   ||||||||||||||||||||||||    
T  27331892 tcactattataagcaaaaatcaacattttagattcattcaattaat 27331847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 38465922 - 38465877
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||||| |||| |||||  |||||||||||||||||||||||||    
T  38465922 tcactattgtaagcaaaaatctacattttagattcattcaattaat 38465877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 43732149 - 43732190
Alignment:
Q  341 tattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||| |||||  |||||||||||||||||||||||||    
T  43732149 tattataagcaaaaatatacattttagattcattcaattaat 43732190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 378
Target Start/End: Original strand, 45472417 - 45472458
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaat 378  Q
    ||||||||||||||||||| |||| ||||| |||||||||||    
T  45472417 tcactattataagtaaaaatttactttttaaattcattcaat 45472458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 3121555 - 3121511
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaa 381  Q
    ||||||||||||| |||||  |||||||||||| |||||||||||    
T  3121555 tcactattataagcaaaaatctacattttagatccattcaattaa 3121511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 7258718 - 7258673
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||    
T  7258718 tcactattataagtaaaattttacattttagattcattcaattaat 7258673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 10117103 - 10117058
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  10117103 tcactattataagcaaaaatttacattttagattcattcaattaat 10117058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 2296607 - 2296560
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaataa 384  Q
    ||||||||||||||||||  || |||||||||||||||||||||||||    
T  2296607 tcactattataagtaaaattttgcattttagattcattcaattaataa 2296560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 13290042 - 13290088
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaata 383  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  13290042 tcactattataagcaaaaaattacattttggattcattcaattaata 13290088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 33385300 - 33385259
Alignment:
Q  341 tattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  33385300 tattataagcaaaaccttacattttagattcattcaattaat 33385259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 384
Target Start/End: Complemental strand, 2805944 - 2805899
Alignment:
Q  339 actattataagtaaaaacttacattttagattcattcaattaataa 384  Q
    |||||||||| |||||  |||||||||| |||||||||||||||||    
T  2805944 actattataaataaaattttacattttaaattcattcaattaataa 2805899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 3444629 - 3444674
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||  ||||| |||||||||| |||||||||||||||    
T  3444629 tcactattataaacaaaaatttacattttatattcattcaattaat 3444674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 4613692 - 4613651
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaat 378  Q
    ||||||||||||||||||| | |||||||| |||||||||||    
T  4613692 tcactattataagtaaaaattgacattttaaattcattcaat 4613651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 9015945 - 9015904
Alignment:
Q  341 tattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||||||||||||  || ||||||||||||||||||||||    
T  9015945 tattataagtaaaaatctatattttagattcattcaattaat 9015904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 11803327 - 11803278
Alignment:
Q  226 acaccaacacaacacaaacacaaataattacattggattatgtcattttc 275  Q
    ||||||||||||||| |||||| ||||||||| || ||||||| ||||||    
T  11803327 acaccaacacaacaccaacacatataattacactgaattatgtgattttc 11803278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 13496568 - 13496523
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| |||||||||| ||||||||| |||||    
T  13496568 tcactattataagcaaaaatttacattttaaattcattcatttaat 13496523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 34326378 - 34326333
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||||||  || ||||||| |||||||||||||||    
T  34326378 tcactattataagtaaaattttgcattttacattcattcaattaat 34326333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 36916590 - 36916635
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||||||  || ||||||||||| |||||||||||    
T  36916590 tcactattataagtaaaattttgcattttagatttattcaattaat 36916635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 46412821 - 46412776
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  46412821 tcactattataagtaaaaatttacattttggattcattcaattaat 46412776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 39940619 - 39940572
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaataa 384  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||||    
T  39940619 tcactattataagtaaaaatttactttttagattcattcaataaataa 39940572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 13043473 - 13043428
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||||||| | | ||||||||||||||||||||||    
T  13043473 tcactattataagtaaaaattaatattttagattcattcaattaat 13043428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 34954029 - 34953984
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  34954029 tcactattataagcaaaaatttatattttagattcattcaattaat 34953984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 382
Target Start/End: Original strand, 3549788 - 3549831
Alignment:
Q  339 actattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||| |||||  |||||||||||||||||||||||||    
T  3549788 actattataagcaaaaatctacattttagattcattcaattaat 3549831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 376
Target Start/End: Original strand, 23398426 - 23398465
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattca 376  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  23398426 tcactattataagcaaaaactaacattttagattcattca 23398465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 342 - 380
Target Start/End: Complemental strand, 5595548 - 5595510
Alignment:
Q  342 attataagtaaaaacttacattttagattcattcaatta 380  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  5595548 attataagtaaaaatctacattttagattcattcaatta 5595510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 3013617 - 3013662
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| ||| |||||||||| |||||||||||    
T  3013617 tcactattataagcaaaaaattatattttagatttattcaattaat 3013662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 6508404 - 6508449
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| |||||| ||||||||||||| |||||    
T  6508404 tcactattataagcaaaaatttacatcttagattcattcatttaat 6508449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 8338682 - 8338727
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| |||||  ||||||||||||||||||| |||||    
T  8338682 tcactattataagcaaaaatctacattttagattcattcatttaat 8338727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 14214662 - 14214621
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaat 378  Q
    ||||||||||||| |||||||||| |||||| ||||||||||    
T  14214662 tcactattataagcaaaaacttactttttaggttcattcaat 14214621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 23575451 - 23575406
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||| |||||||||||| ||||||||||| |||||||| |||||    
T  23575451 tcactaatataagtaaaaaattacattttaggttcattcatttaat 23575406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 33939430 - 33939385
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||  |||||||||||||||||||| |||||    
T  33939430 tcactattataagcaaaagtttacattttagattcattcatttaat 33939385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 42761464 - 42761505
Alignment:
Q  341 tattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||| ||||  ||||||||||||||||||||||||||    
T  42761464 tattataagcaaaactttacattttagattcattcaattaat 42761505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 45115303 - 45115258
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| |||||  ||||||||||||||||||| |||||    
T  45115303 tcactattataagcaaaaatctacattttagattcattcatttaat 45115258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 47446764 - 47446723
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaat 378  Q
    ||||||||||||||||||||| || ||||| |||||||||||    
T  47446764 tcactattataagtaaaaactcactttttaaattcattcaat 47446723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 18551394 - 18551354
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaa 377  Q
    |||||||||||| |||||| | |||||||||||||||||||    
T  18551394 tcactattataaataaaaattaacattttagattcattcaa 18551354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 3199848 - 3199805
Alignment:
Q  340 ctattataagtaaaaacttacattttagattcattcaattaata 383  Q
    |||||||||| |||||||||||||||| ||||||||||||||||    
T  3199848 ctattataagcaaaaacttacattttatattcattcaattaata 3199805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 382
Target Start/End: Complemental strand, 31158973 - 31158930
Alignment:
Q  339 actattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||||||||||||||  ||||||||||||||||| |||||||    
T  31158973 actattataagtaaaaatctacattttagattcattaaattaat 31158930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 375
Target Start/End: Original strand, 12383596 - 12383634
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattc 375  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  12383596 tcactattataagtaaaaatttacattttaaattcattc 12383634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 6560790 - 6560745
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||| |||||| ||||| |||||||||||||||||||| |||||    
T  6560790 tcactaatataagcaaaaaattacattttagattcattcatttaat 6560745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 8146082 - 8146037
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||| |||||| ||||| |||||||||||||||||||| |||||    
T  8146082 tcactaatataagcaaaaaattacattttagattcattcatttaat 8146037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 8449709 - 8449664
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| | | ||||||||||||||||||||||    
T  8449709 tcactattataagcaaaaattaatattttagattcattcaattaat 8449664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 8458513 - 8458468
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| | | ||||||||||||||||||||||    
T  8458513 tcactattataagcaaaaattaatattttagattcattcaattaat 8458468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 10258433 - 10258392
Alignment:
Q  341 tattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||| | || |||||||||||||||||||||    
T  10258433 tattataagtaaaaaataactttttagattcattcaattaat 10258392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 11637177 - 11637222
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||  |||||||||| |||||||||||||||    
T  11637177 tcactattataagcaaaacattacattttaaattcattcaattaat 11637222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 11746361 - 11746316
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||| ||||||  ||||| ||||||||||||||||||||||||||    
T  11746361 tcactgttataaaaaaaaatttacattttagattcattcaattaat 11746316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 12383920 - 12383875
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| |||||  ||||||||||| |||||||||||||    
T  12383920 tcactattataagcaaaaatctacattttagactcattcaattaat 12383875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 13281541 - 13281586
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| |||||  || ||||||||||||||||||||||    
T  13281541 tcactattataagcaaaaatctagattttagattcattcaattaat 13281586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 14031802 - 14031757
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||| ||||||||||||||  || ||||||||||||||||||||||    
T  14031802 tcacaattataagtaaaaatctatattttagattcattcaattaat 14031757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 17168963 - 17168914
Alignment:
Q  225 gacaccaacacaacacaaacacaaataattacattggattatgtcatttt 274  Q
    |||||||| || ||||||||||| ||| |||||||| |||||||||||||    
T  17168963 gacaccaatacgacacaaacacatatagttacattgaattatgtcatttt 17168914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 28554954 - 28554999
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||| |||||||||||| ||||||||||| |||||||| |||||    
T  28554954 tcactaatataagtaaaaatttacattttaggttcattcatttaat 28554999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 29418941 - 29418986
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| |||||||||| ||| |||||||||||    
T  29418941 tcactattataagcaaaaaattacattttacattaattcaattaat 29418986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 30916961 - 30917006
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| |||||||||| ||| |||||||||||    
T  30916961 tcactattataagcaaaaaattacattttacatttattcaattaat 30917006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 31398359 - 31398314
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||  |||||||||||||||||||| |||||    
T  31398359 tcactattataagcaaaagtttacattttagattcattcatttaat 31398314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 378
Target Start/End: Original strand, 1302759 - 1302795
Alignment:
Q  342 attataagtaaaaacttacattttagattcattcaat 378  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  1302759 attataagtaaaaatttacattttagtttcattcaat 1302795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 26920806 - 26920760
Alignment:
Q  336 ctcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||||||||||||||||  || |||||||||||||||||||||||    
T  26920806 ctcactattataagtaaaactttgcattttagattcattcaattaat 26920760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 54713105 - 54713150
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| |||||||||||||||||||| |||||    
T  54713105 tcactattataagcaaaaatttacattttagattcattcatttaat 54713150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 33377547 - 33377503
Alignment:
Q  338 cactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||||||||||||||  || |||||||||||||||||||||||    
T  33377547 cactattataagtaaaattttgcattttagattcattcaattaat 33377503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 23568513 - 23568474
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattca 376  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  23568513 tcactattataagcaaaaactaacattttagattcattca 23568474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 382
Target Start/End: Complemental strand, 38716439 - 38716396
Alignment:
Q  339 actattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||    
T  38716439 actattataaacaaaaatttacattttagattcattcaattaat 38716396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 56364459 - 56364420
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattca 376  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  56364459 tcactattataagtaaaaatctacattttagattcattca 56364420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 12672458 - 12672500
Alignment:
Q  341 tattataagtaaaaacttacattttagattcattcaattaata 383  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  12672458 tattataaacaaaaatttacattttagattcattcaattaata 12672500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 3511716 - 3511761
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||||| |||||| ||||  ||||||||||||||||||||||||||    
T  3511716 tcactaatataagcaaaactttacattttagattcattcaattaat 3511761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 3669563 - 3669608
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||| | ||| ||||||||||||||||||||||    
T  3669563 tcactattataagcaaatatttatattttagattcattcaattaat 3669608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 4484085 - 4484126
Alignment:
Q  341 tattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||  || |||||||||||||||||||||||    
T  4484085 tattataagtaaaactttgcattttagattcattcaattaat 4484126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 12168641 - 12168686
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||||||| ||| |||||| |||||| ||||||||    
T  12168641 tcactattataagtaaaaatttaaattttaaattcatacaattaat 12168686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 14450964 - 14451009
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| |||||  ||||||||||||||||||| |||||    
T  14450964 tcactattataagcaaaaatctacattttagattcattcatttaat 14451009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 18881477 - 18881432
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||  |||||  |||||||||||||||||||||||||    
T  18881477 tcactattataaccaaaaatatacattttagattcattcaattaat 18881432  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 23071413 - 23071458
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    |||| |||||||||||||| ||| |||||||||||||||| |||||    
T  23071413 tcacaattataagtaaaaatttatattttagattcattcatttaat 23071458  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 24798134 - 24798179
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||||||| |||||||||| ||| ||||| |||||    
T  24798134 tcactattataagtaaaaatttacattttatatttattcatttaat 24798179  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 26636573 - 26636532
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaat 378  Q
    ||||||||||||||||||| |||  |||||||||||||||||    
T  26636573 tcactattataagtaaaaatttattttttagattcattcaat 26636532  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 38381983 - 38382020
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcatt 374  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  38381983 tcactattataagcaaaaatttacattttagattcatt 38382020  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 41346474 - 41346511
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcatt 374  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  41346474 tcactattataagtaaaaatttatattttagattcatt 41346511  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 49481887 - 49481932
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||  |||||||||||||||||||| |||||    
T  49481887 tcactattataagcaaaagtttacattttagattcattcatttaat 49481932  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 53176441 - 53176396
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| ||| |||||||||||||||| |||||    
T  53176441 tcactattataagcaaaaatttatattttagattcattcagttaat 53176396  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 55416311 - 55416352
Alignment:
Q  341 tattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||||| ||| |||| |||||||||||||||||    
T  55416311 tattataagtaaaaatttatatttgagattcattcaattaat 55416352  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 374
Target Start/End: Complemental strand, 56257468 - 56257431
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcatt 374  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  56257468 tcactattataagtaaaaagttactttttagattcatt 56257431  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 40952477 - 40952437
Alignment:
Q  341 tattataagtaaaaacttacattttagattcattcaattaa 381  Q
    ||||||||| ||||| ||| |||||||||||||||||||||    
T  40952477 tattataagcaaaaatttatattttagattcattcaattaa 40952437  T

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Target: scaffold0341 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 2427 - 2472
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| |||||| ||||||||||||| |||||    
T  2427 tcactattataagcaaaaatttacatcttagattcattcatttaat 2472  T

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Target: scaffold0341; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 10082 - 10127
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| ||||| |||||| ||||||||||||| |||||    
T  10082 tcactattataagcaaaaatttacatcttagattcattcatttaat 10127  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 9726 - 9787
Alignment:
Q  214 gtgtcgtgtctgacaccaacacaacacaaacacaaataattacattggattatgtcattttc 275  Q
    |||||||||||||||||||||| ||||  ||||| ||||||||| || |||| || ||||||    
T  9726 gtgtcgtgtctgacaccaacacgacaccgacacatataattacactgaattaagtgattttc 9787  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 7790 - 7745
Alignment:
Q  337 tcactattataagtaaaaacttacattttagattcattcaattaat 382  Q
    ||||||||||||| |||||  ||||||||||||||||||| |||||    
T  7790 tcactattataagcaaaaatctacattttagattcattcatttaat 7745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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