View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6351_high_5 (Length: 366)

Name: NF6351_high_5
Description: NF6351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6351_high_5
NF6351_high_5
[»] chr3 (43 HSPs)
chr3 (1-181)||(35373401-35373581)
chr3 (213-324)||(35369788-35369900)
chr3 (215-313)||(35369609-35369709)
chr3 (215-319)||(44822504-44822608)
chr3 (215-258)||(3422212-3422255)
chr3 (215-258)||(18196969-18197012)
chr3 (215-258)||(28096998-28097041)
chr3 (215-259)||(22100925-22100969)
chr3 (215-259)||(22175864-22175908)
chr3 (215-258)||(22101062-22101105)
chr3 (215-258)||(28096678-28096721)
chr3 (215-258)||(28096741-28096784)
chr3 (215-258)||(34492421-34492464)
chr3 (215-258)||(35863356-35863399)
chr3 (273-324)||(53360007-53360058)
chr3 (278-324)||(22101058-22101104)
chr3 (215-324)||(35863293-35863403)
chr3 (216-258)||(44822503-44822545)
chr3 (213-258)||(7115352-7115397)
chr3 (217-258)||(7115612-7115653)
chr3 (219-309)||(35863192-35863284)
chr3 (215-319)||(53359824-53359929)
chr3 (214-258)||(28212821-28212865)
chr3 (215-258)||(18197035-18197078)
chr3 (215-258)||(22100865-22100908)
chr3 (215-258)||(22175999-22176042)
chr3 (215-258)||(27003850-27003893)
chr3 (273-324)||(28096994-28097045)
chr3 (215-258)||(35369602-35369645)
chr3 (273-324)||(35369662-35369713)
chr3 (215-258)||(51139274-51139317)
chr3 (215-258)||(51139337-51139380)
chr3 (215-258)||(53359823-53359866)
chr3 (273-319)||(18196970-18197016)
chr3 (278-324)||(22175995-22176041)
chr3 (215-256)||(13473521-13473562)
chr3 (273-314)||(28212759-28212800)
chr3 (213-246)||(44822668-44822701)
chr3 (273-314)||(53359953-53359994)
chr3 (215-255)||(7115544-7115584)
chr3 (215-255)||(31001000-31001040)
chr3 (214-258)||(51139207-51139251)
chr3 (278-314)||(51139209-51139245)
[»] chr2 (41 HSPs)
chr2 (215-324)||(27339966-27340076)
chr2 (213-319)||(35193066-35193172)
chr2 (212-308)||(7062261-7062357)
chr2 (215-258)||(44972392-44972435)
chr2 (215-324)||(44972456-44972565)
chr2 (215-258)||(13595056-13595099)
chr2 (215-258)||(21956634-21956677)
chr2 (215-313)||(27339787-27339886)
chr2 (215-258)||(310158-310201)
chr2 (215-258)||(13594833-13594876)
chr2 (215-258)||(13595866-13595909)
chr2 (215-258)||(44972263-44972306)
chr2 (215-258)||(44972645-44972688)
chr2 (215-314)||(13595744-13595841)
chr2 (215-319)||(7062187-7062292)
chr2 (215-256)||(7062376-7062417)
chr2 (215-324)||(13595804-13595913)
chr2 (217-258)||(19901409-19901450)
chr2 (215-319)||(21956635-21956740)
chr2 (215-264)||(35192757-35192806)
chr2 (215-256)||(43528771-43528812)
chr2 (216-256)||(310224-310264)
chr2 (280-324)||(27340093-27340137)
chr2 (218-258)||(27340097-27340137)
chr2 (215-258)||(7062186-7062229)
chr2 (215-246)||(21962602-21962633)
chr2 (215-246)||(21962665-21962696)
chr2 (215-246)||(21962728-21962759)
chr2 (215-258)||(25047657-25047700)
chr2 (215-258)||(35192950-35192993)
chr2 (215-258)||(35193130-35193173)
chr2 (215-258)||(44539047-44539090)
chr2 (215-258)||(44539110-44539153)
chr2 (278-324)||(13595052-13595098)
chr2 (220-258)||(13595995-13596033)
chr2 (278-324)||(35193069-35193115)
chr2 (278-319)||(7062312-7062353)
chr2 (213-258)||(25047335-25047380)
chr2 (226-258)||(35192705-35192737)
chr2 (214-246)||(35192820-35192852)
chr2 (273-313)||(43528838-43528878)
[»] chr7 (59 HSPs)
chr7 (215-324)||(20618021-20618130)
chr7 (216-314)||(11320729-11320827)
chr7 (213-257)||(47222026-47222070)
chr7 (215-324)||(9330177-9330288)
chr7 (215-258)||(11320860-11320903)
chr7 (220-313)||(20617963-20618057)
chr7 (213-258)||(20657333-20657378)
chr7 (213-258)||(47221388-47221433)
chr7 (215-319)||(47221389-47221496)
chr7 (216-324)||(47222021-47222130)
chr7 (212-264)||(9301575-9301627)
chr7 (212-264)||(9306013-9306065)
chr7 (215-314)||(9329930-9330030)
chr7 (218-258)||(47912481-47912521)
chr7 (215-258)||(10271499-10271542)
chr7 (219-258)||(10271699-10271738)
chr7 (215-258)||(20480803-20480846)
chr7 (215-324)||(9330241-9330351)
chr7 (215-324)||(20657398-20657507)
chr7 (215-264)||(25801152-25801201)
chr7 (215-324)||(11320664-11320775)
chr7 (215-255)||(11320790-11320830)
chr7 (215-258)||(19373303-19373347)
chr7 (273-313)||(19373430-19373470)
chr7 (215-258)||(9301642-9301685)
chr7 (215-258)||(9301866-9301909)
chr7 (215-258)||(9301929-9301972)
chr7 (215-258)||(9306080-9306123)
chr7 (215-258)||(9306304-9306347)
chr7 (215-258)||(9306367-9306410)
chr7 (215-258)||(9330051-9330094)
chr7 (273-324)||(10271495-10271546)
chr7 (215-258)||(10271567-10271610)
chr7 (215-246)||(10271630-10271661)
chr7 (215-258)||(10271759-10271802)
chr7 (215-258)||(11320986-11321029)
chr7 (215-258)||(19373434-19373477)
chr7 (273-324)||(20480509-20480560)
chr7 (215-258)||(20480513-20480556)
chr7 (215-258)||(20616565-20616608)
chr7 (215-258)||(20618146-20618189)
chr7 (215-258)||(20657524-20657567)
chr7 (215-246)||(35492530-35492561)
chr7 (215-258)||(47221581-47221624)
chr7 (273-319)||(11320856-11320902)
chr7 (215-310)||(20480668-20480765)
chr7 (216-258)||(35492643-35492684)
chr7 (273-319)||(47221454-47221500)
chr7 (215-256)||(9329926-9329967)
chr7 (215-252)||(9330124-9330161)
chr7 (217-258)||(19373580-19373621)
chr7 (278-319)||(20657525-20657566)
chr7 (213-258)||(41755025-41755070)
chr7 (275-324)||(47222084-47222133)
chr7 (220-256)||(20657212-20657248)
chr7 (213-245)||(20692138-20692170)
chr7 (213-245)||(20697616-20697648)
chr7 (213-245)||(25801218-25801250)
chr7 (273-313)||(39678200-39678240)
[»] chr1 (44 HSPs)
chr1 (216-313)||(43574794-43574891)
chr1 (213-313)||(30146414-30146515)
chr1 (215-324)||(50232030-50232141)
chr1 (215-324)||(50232094-50232204)
chr1 (215-319)||(29698569-29698675)
chr1 (213-264)||(29698631-29698682)
chr1 (215-258)||(30143735-30143778)
chr1 (215-258)||(30158516-30158559)
chr1 (213-258)||(8528764-8528809)
chr1 (215-258)||(237493-237536)
chr1 (215-319)||(237494-237597)
chr1 (215-258)||(14495116-14495159)
chr1 (273-324)||(14495304-14495355)
chr1 (215-258)||(23997808-23997851)
chr1 (215-258)||(24162573-24162616)
chr1 (215-258)||(30143990-30144033)
chr1 (215-258)||(30146734-30146777)
chr1 (215-258)||(43574855-43574898)
chr1 (216-258)||(14495308-14495350)
chr1 (216-258)||(30158391-30158433)
chr1 (215-313)||(8528512-8528612)
chr1 (215-256)||(8528635-8528676)
chr1 (218-259)||(20132196-20132237)
chr1 (215-319)||(30143927-30144032)
chr1 (215-319)||(30146671-30146776)
chr1 (215-319)||(30158453-30158558)
chr1 (215-324)||(237550-237658)
chr1 (214-319)||(29698825-29698932)
chr1 (273-313)||(50231917-50231957)
chr1 (215-258)||(8528505-8528548)
chr1 (215-258)||(8528892-8528935)
chr1 (215-258)||(14495501-14495544)
chr1 (215-258)||(29698763-29698806)
chr1 (215-258)||(30143800-30143843)
chr1 (215-258)||(30143863-30143906)
chr1 (215-258)||(30146479-30146522)
chr1 (215-258)||(50231910-50231953)
chr1 (215-258)||(50232224-50232267)
chr1 (220-258)||(20132327-20132365)
chr1 (216-258)||(29698891-29698933)
chr1 (216-258)||(30146608-30146650)
chr1 (278-324)||(50232220-50232266)
chr1 (215-258)||(237743-237787)
chr1 (277-313)||(30158390-30158426)
[»] chr4 (79 HSPs)
chr4 (215-313)||(55764089-55764187)
chr4 (215-319)||(3729882-3729987)
chr4 (216-319)||(10726981-10727085)
chr4 (216-319)||(10940750-10940854)
chr4 (215-258)||(5093532-5093575)
chr4 (215-258)||(5093852-5093895)
chr4 (215-319)||(49358122-49358225)
chr4 (212-258)||(10726913-10726959)
chr4 (212-258)||(10940682-10940728)
chr4 (215-257)||(11973377-11973419)
chr4 (213-258)||(3730261-3730306)
chr4 (213-258)||(3730325-3730370)
chr4 (213-258)||(5526385-5526430)
chr4 (213-258)||(13021499-13021544)
chr4 (216-319)||(44814836-44814940)
chr4 (215-324)||(44815211-44815322)
chr4 (215-258)||(3730131-3730174)
chr4 (273-324)||(3730385-3730436)
chr4 (215-258)||(3730389-3730432)
chr4 (215-258)||(5526257-5526300)
chr4 (273-324)||(10727039-10727090)
chr4 (273-324)||(10940808-10940859)
chr4 (215-258)||(11036957-11037000)
chr4 (215-258)||(12217347-12217390)
chr4 (215-258)||(12218009-12218052)
chr4 (215-258)||(12218202-12218245)
chr4 (215-258)||(12218266-12218309)
chr4 (215-258)||(13021306-13021349)
chr4 (215-258)||(38001843-38001886)
chr4 (215-258)||(49358121-49358164)
chr4 (215-258)||(55828587-55828630)
chr4 (216-258)||(3729818-3729860)
chr4 (213-259)||(12218137-12218183)
chr4 (215-324)||(44672648-44672758)
chr4 (217-258)||(11973927-11973968)
chr4 (214-251)||(44815095-44815132)
chr4 (215-319)||(3730007-3730111)
chr4 (215-308)||(38001920-38002015)
chr4 (215-258)||(3729881-3729924)
chr4 (215-258)||(5093723-5093766)
chr4 (215-258)||(10726655-10726698)
chr4 (215-258)||(10726717-10726760)
chr4 (215-258)||(10726781-10726824)
chr4 (215-258)||(10726980-10727023)
chr4 (215-258)||(10940424-10940467)
chr4 (215-258)||(10940486-10940529)
chr4 (215-258)||(10940550-10940593)
chr4 (215-258)||(10940749-10940792)
chr4 (215-258)||(11037082-11037125)
chr4 (215-258)||(11037267-11037310)
chr4 (215-258)||(33729620-33729663)
chr4 (215-258)||(44672900-44672943)
chr4 (215-258)||(44815026-44815069)
chr4 (215-258)||(49358474-49358517)
chr4 (215-258)||(54197677-54197720)
chr4 (215-258)||(54197988-54198031)
chr4 (215-258)||(55764082-55764125)
chr4 (215-258)||(55828461-55828504)
chr4 (215-258)||(55828524-55828567)
chr4 (273-307)||(5093655-5093689)
chr4 (278-324)||(10726777-10726823)
chr4 (278-324)||(10940546-10940592)
chr4 (278-324)||(11973378-11973424)
chr4 (216-246)||(11973796-11973826)
chr4 (216-258)||(44672838-44672880)
chr4 (216-258)||(44814835-44814877)
chr4 (216-246)||(55764282-55764312)
chr4 (216-246)||(55828726-55828756)
chr4 (215-256)||(11973441-11973482)
chr4 (275-312)||(11973793-11973830)
chr4 (217-258)||(11974333-11974374)
chr4 (273-314)||(54197924-54197965)
chr4 (215-256)||(54197928-54197969)
chr4 (279-319)||(5525319-5525359)
chr4 (218-258)||(11973252-11973292)
chr4 (214-258)||(11974051-11974095)
chr4 (273-313)||(12218273-12218313)
chr4 (273-313)||(55764151-55764191)
chr4 (273-313)||(55828594-55828634)
[»] chr5 (19 HSPs)
chr5 (215-319)||(28263464-28263569)
chr5 (215-324)||(1197465-1197575)
chr5 (215-258)||(28263527-28263570)
chr5 (215-258)||(38938358-38938401)
chr5 (215-256)||(42775152-42775193)
chr5 (215-258)||(28263208-28263251)
chr5 (213-258)||(38938420-38938465)
chr5 (215-258)||(3160052-3160094)
chr5 (273-324)||(14655526-14655577)
chr5 (215-258)||(14655530-14655573)
chr5 (273-324)||(38938354-38938405)
chr5 (273-311)||(28222379-28222417)
chr5 (224-258)||(28604365-28604399)
chr5 (215-256)||(1197597-1197638)
chr5 (273-314)||(42775148-42775189)
chr5 (278-314)||(1197601-1197637)
chr5 (216-256)||(14655586-14655626)
chr5 (278-314)||(28263403-28263439)
chr5 (273-309)||(42775083-42775119)
[»] scaffold0123 (3 HSPs)
scaffold0123 (215-319)||(16876-16980)
scaffold0123 (215-258)||(16938-16981)
scaffold0123 (216-258)||(16642-16684)
[»] chr8 (8 HSPs)
chr8 (215-314)||(24432571-24432671)
chr8 (215-258)||(24410428-24410471)
chr8 (273-325)||(24410230-24410282)
chr8 (215-258)||(24409851-24409894)
chr8 (218-258)||(33848532-33848572)
chr8 (215-246)||(27023151-27023182)
chr8 (213-241)||(24410382-24410410)
chr8 (215-258)||(24432865-24432911)
[»] chr6 (38 HSPs)
chr6 (215-319)||(10928217-10928321)
chr6 (215-313)||(10928285-10928384)
chr6 (215-258)||(16306174-16306217)
chr6 (218-324)||(27900825-27900931)
chr6 (215-324)||(2537560-2537669)
chr6 (213-258)||(16306108-16306153)
chr6 (216-256)||(2438317-2438357)
chr6 (215-319)||(2438474-2438578)
chr6 (215-258)||(2438252-2438295)
chr6 (215-258)||(2438536-2438579)
chr6 (215-258)||(10928216-10928259)
chr6 (215-258)||(14894747-14894790)
chr6 (215-258)||(16306337-16306380)
chr6 (215-258)||(32249642-32249685)
chr6 (213-258)||(2537692-2537737)
chr6 (221-258)||(10928405-10928442)
chr6 (218-324)||(10928467-10928575)
chr6 (273-314)||(11990023-11990064)
chr6 (217-258)||(17589345-17589386)
chr6 (215-258)||(2537438-2537481)
chr6 (215-258)||(3676662-3676705)
chr6 (215-258)||(3676989-3677032)
chr6 (215-258)||(3677116-3677159)
chr6 (215-258)||(3677339-3677382)
chr6 (215-258)||(10928471-10928514)
chr6 (215-258)||(17589851-17589894)
chr6 (215-258)||(23915118-23915161)
chr6 (215-258)||(23915183-23915226)
chr6 (215-258)||(27900570-27900613)
chr6 (215-258)||(27900884-27900927)
chr6 (278-324)||(16306111-16306157)
chr6 (212-258)||(19709337-19709383)
chr6 (278-324)||(19709341-19709387)
chr6 (215-256)||(175085-175126)
chr6 (215-244)||(10928608-10928637)
chr6 (215-252)||(11990023-11990060)
chr6 (215-256)||(17589598-17589639)
chr6 (213-246)||(27900945-27900978)
[»] scaffold0086 (5 HSPs)
scaffold0086 (215-313)||(48439-48536)
scaffold0086 (215-324)||(48743-48852)
scaffold0086 (215-314)||(48499-48600)
scaffold0086 (215-258)||(48432-48475)
scaffold0086 (215-258)||(48683-48726)
[»] scaffold0025 (2 HSPs)
scaffold0025 (273-324)||(3125-3176)
scaffold0025 (216-258)||(3130-3172)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 35373581 - 35373401
Alignment:
Q  1 cggatgtaagacattccgaattgcaaagttatccctcgttggaattcaatcaaggagaagggtccaaaaaaggtgacactcttccaaaggtactcaaaca 100  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35373581 cggatgtaagacattccgaattggaaagttatccctcattggaattcaatcaaggagaagggtccaaaaaaggtgacactcttccaaaggtactcaaaca 35373482  T
Q  101 cccatttctccatcctacccaaatcaccatcaaggagaaacccctcctctaataggattatctaacagaaaaatcaccatc 181  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||    
T  35373481 cccatttctccaccctacccaaatcaccatcaaggagaatcccctcctctaataggatgatctaacagaaaaaacaccatc 35373401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 213 - 324
Target Start/End: Complemental strand, 35369900 - 35369788
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgct 311  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  35369900 aagatttaaagtccaatctttaacattattttttgctcacgtttgtcgctaatctttttttagagtatttaaagttcaatcttcaacattattttttgct 35369801  T
Q  312 cacctttgctact 324  Q
    ||| |||| ||||    
T  35369800 cacgtttgttact 35369788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 313
Target Start/End: Complemental strand, 35369709 - 35369609
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgcta--annnnnnnnagagtatttaaagttcaatcttcaacattattttttgctc 312  Q
    |||||||||||||||||||||||||||||||| ||||| |||||  |||  |        |||| ||||||||||||||||| |||||||||||||||||    
T  35369709 gatttaaagtccaatctttaacattattttttgctcacttttgttactaatattttttgtagaggatttaaagttcaatctttaacattattttttgctc 35369610  T
Q  313 a 313  Q
    |    
T  35369609 a 35369609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 44822608 - 44822504
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||||||||||||| |||||||||||||||||  ||||||||||  ||||        |||| ||||||||| ||||||| | |||||||||||||||||    
T  44822608 gatttaaagtccaacctttaacattatttttttgtcacgtttgttactaattttttttagagcatttaaagtccaatctttaccattattttttgctcac 44822509  T
Q  315 ctttg 319  Q
     ||||    
T  44822508 gtttg 44822504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 3422212 - 3422255
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  3422212 gatttaaagtccaatctttaacaatattttttactcacgtttgt 3422255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 18197012 - 18196969
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  18197012 gatttaaagtccaatctttaacattattttttgctcacgtttgt 18196969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 28097041 - 28096998
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  28097041 gatttaaagtccaatctttaacattattttttgctcacgtttgt 28096998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 22100969 - 22100925
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtc 259  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  22100969 gatttaaagtccaatctttaacaatattttttgctcacgtttgtc 22100925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 22175908 - 22175864
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtc 259  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  22175908 gatttaaagtccaatctttaacaatattttttgctcacgtttgtc 22175864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 22101105 - 22101062
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| ||||||||||||||||||||| |||||||||||    
T  22101105 gatttaaagttcaatctttaacattattttttgctcacgtttgt 22101062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 28096721 - 28096678
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||| |||||||||||||||| |||||||||||    
T  28096721 gatttaaagtccaatatttaacattattttttgctcacgtttgt 28096678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 28096784 - 28096741
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| | |||||||||    
T  28096784 gatttaaagtccaatctttaacattattttttgcccacgtttgt 28096741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 34492464 - 34492421
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||| ||||||||||| |||||||||||    
T  34492464 gatttaaagtccaatctttaccattattttttgctcacgtttgt 34492421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 35863356 - 35863399
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| ||||| |||||    
T  35863356 gatttaaagtccaatctttaacattattttttgctcacatttgt 35863399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 53360058 - 53360007
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    |||||||||||||||||||||| ||||| ||||||||||||| |||| ||||    
T  53360058 agagtatttaaagttcaatctttaacatcattttttgctcacatttgttact 53360007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 22101104 - 22101058
Alignment:
Q  278 atttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  22101104 atttaaagttcaatctttaacattattttttgctcacgtttgttact 22101058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 35863293 - 35863403
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||||||||||||||||||||||||||||||| ||  | |||||  ||||         |||| ||||||||| ||||||| ||||||||||||||||||    
T  35863293 gatttaaagtccaatctttaacattattttttgctaccatttgttactaatatttttttagaggatttaaagtccaatctttaacattattttttgctca 35863392  T
Q  314 cctttgctact 324  Q
    | |||| ||||    
T  35863393 catttgttact 35863403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 44822545 - 44822503
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  44822545 atttaaagtccaatctttaccattattttttgctcacgtttgt 44822503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 7115352 - 7115397
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||||||||||| || |||| ||||||    
T  7115352 aagatttaaagtccaatctttaacattatttattgctcaagtttgt 7115397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 7115612 - 7115653
Alignment:
Q  217 tttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  7115612 tttaaagtccaatctttaacattatttgttgctcacgtttgt 7115653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 309
Target Start/End: Original strand, 35863192 - 35863284
Alignment:
Q  219 taaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnn--agagtatttaaagttcaatcttcaacattattttttg 309  Q
    ||||||||||| |||||||||||||||| |||| ||||||  ||||          |||||||||||||||||||||| ||||||||||||||    
T  35863192 taaagtccaatttttaacattattttttgctcatgtttgttactaatattttttttagagtatttaaagttcaatctttaacattattttttg 35863284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 53359929 - 53359824
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    ||||||||||||||||||||||||||||||||  ||| ||||||  ||||         |||| ||||||||| ||||||| | ||||||||||||||||    
T  53359929 gatttaaagtccaatctttaacattattttttgttcatgtttgtttctaatctttttttagaggatttaaagtccaatctttaccattattttttgctca 53359830  T
Q  314 cctttg 319  Q
    | ||||    
T  53359829 catttg 53359824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 28212821 - 28212865
Alignment:
Q  214 agatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||| |||||||| | |||||||||    
T  28212821 agatttaaagtccaatctttaacactattttttgcgcacgtttgt 28212865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 18197078 - 18197035
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||    
T  18197078 gatttaaagtccaatctttaaccttattctttactcatgtttgt 18197035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 22100908 - 22100865
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||| ||||| ||||||||||||||||||||||||| ||||||    
T  22100908 gatttcaagtcaaatctttaacattattttttactcaagtttgt 22100865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 22176042 - 22175999
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| |||||||||||||||| |||| |||||||||||    
T  22176042 gatttaaagttcaatctttaacattatattttgctcacgtttgt 22175999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 27003850 - 27003893
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||    
T  27003850 gatttaaagtccaatatttaacattattttttgctcatgtttgt 27003893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 28097045 - 28096994
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    |||| ||||||||| ||||||| ||||||||||||||||||| |||| ||||    
T  28097045 agaggatttaaagtccaatctttaacattattttttgctcacgtttgttact 28096994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 35369645 - 35369602
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| ||||||||||||||||||||| |||| ||||||    
T  35369645 gatttaaagttcaatctttaacattattttttgctcatgtttgt 35369602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 35369713 - 35369662
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    |||| ||||||||| ||||||| ||||||||||||||||||| |||| ||||    
T  35369713 agaggatttaaagtccaatctttaacattattttttgctcacttttgttact 35369662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 51139274 - 51139317
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| |||||||||||| |||||||| |||||||||||    
T  51139274 gatttaaagttcaatctttaacaatatttttttctcacgtttgt 51139317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 51139337 - 51139380
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  51139337 gatttaaagtccaatctttaacattatattttgttcacgtttgt 51139380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 53359866 - 53359823
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||    
T  53359866 gatttaaagtccaatctttaccattattttttgctcacatttgt 53359823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 18197016 - 18196970
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttg 319  Q
    |||| ||||||||| ||||||| ||||||||||||||||||| ||||    
T  18197016 agaggatttaaagtccaatctttaacattattttttgctcacgtttg 18196970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 22176041 - 22175995
Alignment:
Q  278 atttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    ||||||||||||||||| |||||||| |||||||||| |||| ||||    
T  22176041 atttaaagttcaatctttaacattatattttgctcacgtttgttact 22175995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 13473562 - 13473521
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgttt 256  Q
    ||||| |||||||||||||||||||||||||| |||| ||||    
T  13473562 gatttcaagtccaatctttaacattattttttgctcatgttt 13473521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 28212759 - 28212800
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||| ||||||||||||||||| |||| ||||||||||||||    
T  28212759 agagcatttaaagttcaatctttaacaatattttttgctcac 28212800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 44822701 - 44822668
Alignment:
Q  213 aagatttaaagtccaatctttaacattatttttt 246  Q
    ||||||||||||||||| ||||||||||||||||    
T  44822701 aagatttaaagtccaatatttaacattatttttt 44822668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Complemental strand, 53359994 - 53359953
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||| ||||||||||||||||| ||||| |||||||||||||    
T  53359994 agaggatttaaagttcaatctttaacatgattttttgctcac 53359953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 7115544 - 7115584
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtt 255  Q
    ||||||||||| ||||||||||| |||||||| ||||||||    
T  7115544 gatttaaagtcaaatctttaacaatatttttttctcacgtt 7115584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 31001040 - 31001000
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtt 255  Q
    ||||||||||||||| |||| ||||||||||| ||||||||    
T  31001040 gatttaaagtccaatatttaccattattttttgctcacgtt 31001000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 51139207 - 51139251
Alignment:
Q  214 agatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||| |||||||||||| |||||||| |||||| ||||    
T  51139207 agatttaaagttcaatctttaacaatattttttgctcacgcttgt 51139251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 51139209 - 51139245
Alignment:
Q  278 atttaaagttcaatcttcaacattattttttgctcac 314  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  51139209 atttaaagttcaatctttaacaatattttttgctcac 51139245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 27340076 - 27339966
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnna-gagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    ||||||||||||||| |||||||||||||||| |||||||||||  ||||          ||||||||||||||||||||| ||||||||||||||||||    
T  27340076 gatttaaagtccaatttttaacattattttttgctcacgtttgtaactaatcttttttttgagtatttaaagttcaatctttaacattattttttgctca 27339977  T
Q  314 cctttgctact 324  Q
    | |||| ||||    
T  27339976 cgtttgttact 27339966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 213 - 319
Target Start/End: Original strand, 35193066 - 35193172
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctc 312  Q
    |||||||||||| |||||||||||||||||||||  ||||||||||  ||||        |||| ||||||||||||||||| | |||||||||||||||    
T  35193066 aagatttaaagttcaatctttaacattattttttggtcacgtttgttactaatttcttttagaggatttaaagttcaatctttaccattattttttgctc 35193165  T
Q  313 acctttg 319  Q
    || ||||    
T  35193166 acgtttg 35193172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 308
Target Start/End: Complemental strand, 7062357 - 7062261
Alignment:
Q  212 aaagatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattatttttt 308  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||  ||||        |||| ||||||||| ||||||| || ||||||||||    
T  7062357 aaagatttaaagtccaatctttaacattattttttgctcacgtttgtttctaatattttttagaggatttaaagtccaatctttaatattatttttt 7062261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 44972392 - 44972435
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  44972392 gatttaaagtccaatctttaacattattttttactcacgtttgt 44972435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 44972456 - 44972565
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||||||||||||||||||||||||||||||| ||||||||| |  ||||        |||| ||||||||| ||||||  |||||||| ||||||||||    
T  44972456 gatttaaagtccaatctttaacattatttttttctcacgtttattactaattttttttagaggatttaaagtccaatctataacattatattttgctcac 44972555  T
Q  315 ctttgctact 324  Q
     |||| ||||    
T  44972556 gtttgttact 44972565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 13595099 - 13595056
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  13595099 gatttaaagtccaatctttaacattattttttgctcacgtttgt 13595056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 21956677 - 21956634
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  21956677 gatttaaagtccaatctttaacattattttttgctcacgtttgt 21956634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 313
Target Start/End: Complemental strand, 27339886 - 27339787
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||  ||||         |||| ||||||||||||||||| | ||||||||||||||||    
T  27339886 gatttaaagtctaatttttaacattattttttactcacgtttgttactaatatttttttagaggatttaaagttcaatctttaccattattttttgctca 27339787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 310201 - 310158
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||| ||||| |||||||||||    
T  310201 gatttaaagtccaatctttaacattaatttttgctcacgtttgt 310158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 13594876 - 13594833
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||| ||||||||||| |||||||||||    
T  13594876 gatttaaagtccaatctttaccattattttttgctcacgtttgt 13594833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 13595866 - 13595909
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  13595866 gatttaaagtccaatctttaacaatattttttgctcacgtttgt 13595909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 44972263 - 44972306
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||    
T  44972263 gatttaaagtccaatctttaacattattttttaatcaagtttgt 44972306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 44972645 - 44972688
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  44972645 gatttaaagtccaatctttaacaatattttttgctcacgtttgt 44972688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 314
Target Start/End: Original strand, 13595744 - 13595841
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||  ||||        |||| ||||||||||||||||| |||| ||||||||||||||    
T  13595744 gatttaaagtc-aatctttaacattatttttttctcgcgtttgttactaattgtttt-agaggatttaaagttcaatctttaacagtattttttgctcac 13595841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 7062292 - 7062187
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnn-agagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    ||||||||||||||||||||| |||||||||| |  ||||||||  ||||         |||| ||||||||||||||||| | ||||||||||||||||    
T  7062292 gatttaaagtccaatctttaatattattttttccctacgtttgttactaatatttttttagaggatttaaagttcaatctttaccattattttttgctca 7062193  T
Q  314 cctttg 319  Q
    | ||||    
T  7062192 cgtttg 7062187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 7062417 - 7062376
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgttt 256  Q
    ||||||||||||||| |||||||||||||||| |||||||||    
T  7062417 gatttaaagtccaatttttaacattattttttgctcacgttt 7062376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 13595804 - 13595913
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||||||||| |||||||||||| |||||||| ||||||||| |  ||||        | || ||||||||| ||||||| |||| ||||||||||||||    
T  13595804 gatttaaagttcaatctttaacagtattttttgctcacgtttattactaattttttttataggatttaaagtccaatctttaacaatattttttgctcac 13595903  T
Q  315 ctttgctact 324  Q
     |||| ||||    
T  13595904 gtttgttact 13595913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 19901409 - 19901450
Alignment:
Q  217 tttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  19901409 tttaaagtccaatctttagcattattttttgctcacgtttgt 19901450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 21956740 - 21956635
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgcta-annnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||||||||||||||||||||||||||||||| || | ||||||  |||          |||| ||||||||| ||||||| ||||||||||||||||||    
T  21956740 gatttaaagtccaatctttaacattattttttgctaaagtttgttactagtctttttttagaggatttaaagtccaatctttaacattattttttgctca 21956641  T
Q  314 cctttg 319  Q
    | ||||    
T  21956640 cgtttg 21956635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 35192757 - 35192806
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa 264  Q
    |||| |||||||||||||||||||||| |||| |||||||||||| ||||    
T  35192757 gattaaaagtccaatctttaacattatattttgctcacgtttgtcactaa 35192806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 43528812 - 43528771
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgttt 256  Q
    |||||||| ||||||||||||||||||||||| |||||||||    
T  43528812 gatttaaaatccaatctttaacattattttttgctcacgttt 43528771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 310264 - 310224
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgttt 256  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  310264 atttaaagtccaatctttaacattattttttgatcacgttt 310224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 27340137 - 27340093
Alignment:
Q  280 ttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||    
T  27340137 ttaaagttcaatctttaacattattttttgctcacgtttgttact 27340093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 27340137 - 27340097
Alignment:
Q  218 ttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||| ||||||||||||||||||||| |||||||||||    
T  27340137 ttaaagttcaatctttaacattattttttgctcacgtttgt 27340097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 7062229 - 7062186
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||    
T  7062229 gatttaaagttcaatctttaccattattttttgctcacgtttgt 7062186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 21962633 - 21962602
Alignment:
Q  215 gatttaaagtccaatctttaacattatttttt 246  Q
    ||||||||||||||||||||||||||||||||    
T  21962633 gatttaaagtccaatctttaacattatttttt 21962602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 21962696 - 21962665
Alignment:
Q  215 gatttaaagtccaatctttaacattatttttt 246  Q
    ||||||||||||||||||||||||||||||||    
T  21962696 gatttaaagtccaatctttaacattatttttt 21962665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 21962759 - 21962728
Alignment:
Q  215 gatttaaagtccaatctttaacattatttttt 246  Q
    ||||||||||||||||||||||||||||||||    
T  21962759 gatttaaagtccaatctttaacattatttttt 21962728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 25047657 - 25047700
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||| ||||||||||| | |||||||||    
T  25047657 gatttaaagtccaatctttaccattattttttgcccacgtttgt 25047700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 35192950 - 35192993
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||| ||||||||||||||| ||||||| |||||||||||    
T  35192950 gatttaaaatccaatctttaacatgattttttcctcacgtttgt 35192993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 35193130 - 35193173
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||    
T  35193130 gatttaaagttcaatctttaccattattttttgctcacgtttgt 35193173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 44539047 - 44539090
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||    
T  44539047 gatttaaagtccaatctttaacaatattttttgttcacgtttgt 44539090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 44539110 - 44539153
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||  |||||||||||||| |||||||||||    
T  44539110 gatttaaagtccaatcagtaacattattttttgctcacgtttgt 44539153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 13595098 - 13595052
Alignment:
Q  278 atttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    ||||||||| ||||||| ||||||||||||||||||| |||| ||||    
T  13595098 atttaaagtccaatctttaacattattttttgctcacgtttgttact 13595052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 13595995 - 13596033
Alignment:
Q  220 aaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  13595995 aaagtcaaatctttaacaatattttttactcacgtttgt 13596033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 35193069 - 35193115
Alignment:
Q  278 atttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    ||||||||||||||||| |||||||||||||| |||| |||| ||||    
T  35193069 atttaaagttcaatctttaacattattttttggtcacgtttgttact 35193115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 7062353 - 7062312
Alignment:
Q  278 atttaaagttcaatcttcaacattattttttgctcacctttg 319  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||    
T  7062353 atttaaagtccaatctttaacattattttttgctcacgtttg 7062312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 25047335 - 25047380
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| |||||| |||||||||||||||| | |||||||||    
T  25047335 aagatttaaaatccaatatttaacattatttttttcccacgtttgt 25047380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 35192705 - 35192737
Alignment:
Q  226 caatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||| |||||||||||    
T  35192705 caatctttaacattattttttgctcacgtttgt 35192737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 35192820 - 35192852
Alignment:
Q  214 agatttaaagtccaatctttaacattatttttt 246  Q
    |||||||||||||||| ||||||||||||||||    
T  35192820 agatttaaagtccaatatttaacattatttttt 35192852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 43528878 - 43528838
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||| ||||||||||||||||| |||| |||||||||||||    
T  43528878 agaggatttaaagttcaatctttaacaatattttttgctca 43528838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 59)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 20618021 - 20618130
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||||||||||||||||||||||||||||||| |||| ||||||  ||||        |||| ||||||||| ||||||| |||| ||||||||||||||    
T  20618021 gatttaaagtccaatctttaacattattttttgctcatgtttgttactaattttttttagaggatttaaagtccaatctttaacaatattttttgctcac 20618120  T
Q  315 ctttgctact 324  Q
     |||| ||||    
T  20618121 gtttgttact 20618130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 11320729 - 11320827
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    ||||||||||||||||||||||||||||||| ||||| |||||  ||||        |||| ||||||||| ||||||| |||| ||||||||||||||    
T  11320729 atttaaagtccaatctttaacattattttttgctcacatttgttactaattttttttagaggatttaaagtccaatctttaacaatattttttgctcac 11320827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 47222070 - 47222026
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttg 257  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  47222070 aagatttaaagtccaatctttaacattattttttgctcacgtttg 47222026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 9330288 - 9330177
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacatta-ttttttgctc 312  Q
    |||||||||||||||||||||||||| ||||| |||||||||||  ||||         |||||||||||||| ||||||| ||||||| ||||||||||    
T  9330288 gatttaaagtccaatctttaacattagtttttgctcacgtttgttactaatctttttttagagtatttaaagtccaatctttaacattatttttttgctc 9330189  T
Q  313 acctttgctact 324  Q
    || |||| ||||    
T  9330188 acgtttgttact 9330177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 11320860 - 11320903
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  11320860 gatttaaagtccaatctttaacattattttttgctcacgtttgt 11320903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 313
Target Start/End: Original strand, 20617963 - 20618057
Alignment:
Q  220 aaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||         |||| ||||||||| ||||||| ||||||||||||||||||    
T  20617963 aaagtccaatctttaacattatttttttctcacgtttgttactaatatttttttagaggatttaaagtccaatctttaacattattttttgctca 20618057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 20657333 - 20657378
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||    
T  20657333 aagatttaaagtccaatctttaacattactttttgctcacgtttgt 20657378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 47221433 - 47221388
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||    
T  47221433 aagatttaaagttcaatctttaacattattttttgctcacgtttgt 47221388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 47221496 - 47221389
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnn---agagtatttaaagttcaatcttcaacattattttttgct 311  Q
    |||||||||| |||||||||||||||| |||| ||||||||||| |||||           |||  ||||||||||||||||| ||||||||||||||||    
T  47221496 gatttaaagttcaatctttaacattatattttgctcacgtttgttgctaatcttttttttcagaagatttaaagttcaatctttaacattattttttgct 47221397  T
Q  312 cacctttg 319  Q
    ||| ||||    
T  47221396 cacgtttg 47221389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 324
Target Start/End: Complemental strand, 47222130 - 47222021
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||||||||||||||||||||||||| |||| |||||||||||  ||||         |||  ||||||||| ||||||| |||||||||||||||||||    
T  47222130 atttaaagtccaatctttaacattatattttgctcacgtttgttactaatattttttaagaagatttaaagtccaatctttaacattattttttgctcac 47222031  T
Q  315 ctttgctact 324  Q
     |||| ||||    
T  47222030 gtttggtact 47222021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 9301575 - 9301627
Alignment:
Q  212 aaagatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa 264  Q
    |||||||||| ||||||| |||||||||||||||| ||||||||||| |||||    
T  9301575 aaagatttaatgtccaatttttaacattattttttgctcacgtttgttgctaa 9301627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 9306013 - 9306065
Alignment:
Q  212 aaagatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa 264  Q
    |||||||||| ||||||| |||||||||||||||| ||||||||||| |||||    
T  9306013 aaagatttaatgtccaatttttaacattattttttgctcacgtttgttgctaa 9306065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 314
Target Start/End: Complemental strand, 9330030 - 9329930
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||  ||||         |||| ||||||||||||||||| | ||||||||||||||||    
T  9330030 gatttaaagtccaatatttaacattatttttttttcacgtttgttactaatatttttttagaggatttaaagttcaatctttaccattattttttgctca 9329931  T
Q  314 c 314  Q
    |    
T  9329930 c 9329930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 47912521 - 47912481
Alignment:
Q  218 ttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  47912521 ttaaagtccaatcttaaacattattttttactcacgtttgt 47912481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 10271499 - 10271542
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| ||||| |||||    
T  10271499 gatttaaagtccaatctttaacattattttttgctcacatttgt 10271542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 258
Target Start/End: Original strand, 10271699 - 10271738
Alignment:
Q  219 taaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  10271699 taaagtccaatctttaacattattttttgctcacgtttgt 10271738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 20480846 - 20480803
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  20480846 gatttaaagtccaacctttaacattattttttgctcacgtttgt 20480803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 9330351 - 9330241
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||||||||| |||||||||||||||| |||| |||||||||||  ||||         |||| ||||||||| ||||||| ||||||| ||||||||||    
T  9330351 gatttaaagtacaatctttaacattatattttgctcacgtttgttactaatattttttgagaggatttaaagtccaatctttaacattagtttttgctca 9330252  T
Q  314 cctttgctact 324  Q
    | |||| ||||    
T  9330251 cgtttgttact 9330241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 20657398 - 20657507
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||||||||||||||||||||||||||||||| |||| | ||||  ||||        |||| ||||||||| ||||  | |||| ||||||||||||||    
T  20657398 gatttaaagtccaatctttaacattattttttgctcatgcttgttactaattttttttagaggatttaaagtccaattattaacactattttttgctcac 20657497  T
Q  315 ctttgctact 324  Q
     |||| ||||    
T  20657498 gtttgttact 20657507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 25801152 - 25801201
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa 264  Q
    |||||||||||||||||||||| |||| |||| ||||||||||| |||||    
T  25801152 gatttaaagtccaatctttaacgttatattttgctcacgtttgttgctaa 25801201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 11320664 - 11320775
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa--nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctc 312  Q
    |||||||||| |||||||||||| |||||||| |||||||||||  | ||          |||| ||||||||| ||||||| |||||||||||||||||    
T  11320664 gatttaaagttcaatctttaacaatattttttgctcacgtttgttaccaatcttttttttagagaatttaaagtccaatctttaacattattttttgctc 11320763  T
Q  313 acctttgctact 324  Q
    || |||| ||||    
T  11320764 acatttgttact 11320775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 11320790 - 11320830
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtt 255  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  11320790 gatttaaagtccaatctttaacaatattttttgctcacgtt 11320830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 19373303 - 19373347
Alignment:
Q  215 gatttaaagtccaatcttt-aacattattttttactcacgtttgt 258  Q
    |||||||||| |||||||| |||||||||||||||||||||||||    
T  19373303 gatttaaagttcaatcttttaacattattttttactcacgtttgt 19373347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 19373430 - 19373470
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  19373430 agaggatttaaagttcaatctttaacattattttttgctca 19373470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 9301642 - 9301685
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||| |||||||||||||||||| |||| |||||||||||    
T  9301642 gatttaaactccaatctttaacattatattttgctcacgtttgt 9301685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 9301866 - 9301909
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||| ||||||||||||||| |||||||||| |||||||||||    
T  9301866 gatttgaagtccaatctttaatattattttttgctcacgtttgt 9301909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 9301929 - 9301972
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||| ||||| ||||||||||| |||||||||||    
T  9301929 gatttaaagtccaaactttatcattattttttcctcacgtttgt 9301972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 9306080 - 9306123
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||| |||||||||||||||||| |||| |||||||||||    
T  9306080 gatttaaactccaatctttaacattatattttgctcacgtttgt 9306123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 9306304 - 9306347
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||| ||||||||||||||| |||||||||| |||||||||||    
T  9306304 gatttgaagtccaatctttaatattattttttgctcacgtttgt 9306347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 9306367 - 9306410
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||| ||||| ||||||||||| |||||||||||    
T  9306367 gatttaaagtccaaactttatcattattttttcctcacgtttgt 9306410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 9330094 - 9330051
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||| |||||||||||||||| |||||||| |||||||||||    
T  9330094 gatttatagtccaatctttaacaatattttttgctcacgtttgt 9330051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 10271495 - 10271546
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    |||| ||||||||| ||||||| ||||||||||||||||||| |||| ||||    
T  10271495 agaggatttaaagtccaatctttaacattattttttgctcacatttgttact 10271546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 10271567 - 10271610
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||| | |||||||| |||||||||||    
T  10271567 gatttaaagtccaatctttaataatattttttgctcacgtttgt 10271610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 246
Target Start/End: Original strand, 10271630 - 10271661
Alignment:
Q  215 gatttaaagtccaatctttaacattatttttt 246  Q
    ||||||||||||||||||||||||||||||||    
T  10271630 gatttaaagtccaatctttaacattatttttt 10271661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 10271759 - 10271802
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||| |||||||||| |||| ||||||    
T  10271759 gatttaaagtccaatctttaatattattttttgctcatgtttgt 10271802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 11320986 - 11321029
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||||||  |||| |||||||||||    
T  11320986 gatttaaagtccaatctttaacattacctttttctcacgtttgt 11321029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 19373434 - 19373477
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| ||||||||||||||||||||| |||| ||||||    
T  19373434 gatttaaagttcaatctttaacattattttttgctcatgtttgt 19373477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 20480560 - 20480509
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    |||| |||||||||| |||||| ||||||||||||||||||| |||| ||||    
T  20480560 agaggatttaaagttaaatctttaacattattttttgctcacgtttgttact 20480509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 20480556 - 20480513
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||  |||||||||||||||||||| |||||||||||    
T  20480556 gatttaaagttaaatctttaacattattttttgctcacgtttgt 20480513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 20616565 - 20616608
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||| | ||||||||||||||| |||||||||||    
T  20616565 gatttaaagtccaaacattaacattattttttgctcacgtttgt 20616608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 20618146 - 20618189
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||| |||||| |||||||| |||||||||||    
T  20618146 gatttaaagtccaatcattaacaatattttttgctcacgtttgt 20618189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 20657524 - 20657567
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||| || |||||||||| |||||||||||    
T  20657524 gatttaaagtccaatcttcaatattattttttgctcacgtttgt 20657567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 35492561 - 35492530
Alignment:
Q  215 gatttaaagtccaatctttaacattatttttt 246  Q
    ||||||||||||||||||||||||||||||||    
T  35492561 gatttaaagtccaatctttaacattatttttt 35492530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 47221624 - 47221581
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||    
T  47221624 gattgaaagtccaacctttaatattattttttactcacgtttgt 47221581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 11320856 - 11320902
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttg 319  Q
    |||| ||||||||| ||||||| ||||||||||||||||||| ||||    
T  11320856 agaggatttaaagtccaatctttaacattattttttgctcacgtttg 11320902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 310
Target Start/End: Complemental strand, 20480765 - 20480668
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnn--agagtatttaaagttcaatcttcaacattattttttgc 310  Q
    |||||||||||||| || ||| |||||||||||| |||||||||  ||||          |||||||||||||| ||||||| |||||||||||||||    
T  20480765 gatttaaagtccaacctctaatattattttttacccacgtttgttactaatatattttttagagtatttaaagtccaatctttaacattattttttgc 20480668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 35492684 - 35492643
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| ||||||| |||||||||||    
T  35492684 atttaaagtccaatctttaacatgatttttt-ctcacgtttgt 35492643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 47221500 - 47221454
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttg 319  Q
    |||| ||||||||||||||||| |||||||| |||||||||| ||||    
T  47221500 agaggatttaaagttcaatctttaacattatattttgctcacgtttg 47221454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 9329967 - 9329926
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgttt 256  Q
    |||||||||| ||||||||| ||||||||||| |||||||||    
T  9329967 gatttaaagttcaatctttaccattattttttgctcacgttt 9329926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 9330161 - 9330124
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcac 252  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  9330161 gatttaaagtccaatctttaaaattattttttgctcac 9330124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 19373580 - 19373621
Alignment:
Q  217 tttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||| ||| |||||||||||||||||||| |||||||||||    
T  19373580 tttaaggtcaaatctttaacattattttttgctcacgtttgt 19373621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 20657525 - 20657566
Alignment:
Q  278 atttaaagttcaatcttcaacattattttttgctcacctttg 319  Q
    ||||||||| |||||||||| |||||||||||||||| ||||    
T  20657525 atttaaagtccaatcttcaatattattttttgctcacgtttg 20657566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 41755025 - 41755070
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||  ||||||||||||||||||||  ||||||||||    
T  41755025 aagatttaaagtttaatctttaacattattttttgttcacgtttgt 41755070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 47222133 - 47222084
Alignment:
Q  275 agtatttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    |||||||||||| ||||||| |||||||| |||||||||| |||| ||||    
T  47222133 agtatttaaagtccaatctttaacattatattttgctcacgtttgttact 47222084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 20657212 - 20657248
Alignment:
Q  220 aaagtccaatctttaacattattttttactcacgttt 256  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  20657212 aaagtccaatcattaacattattttttgctcacgttt 20657248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #56
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 20692138 - 20692170
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttt 245  Q
    |||||||||||||||||||||||| ||||||||    
T  20692138 aagatttaaagtccaatctttaaccttattttt 20692170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 20697616 - 20697648
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttt 245  Q
    |||||||||||||||||||||||| ||||||||    
T  20697616 aagatttaaagtccaatctttaaccttattttt 20697648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 25801218 - 25801250
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttt 245  Q
    ||||||||||||||||| |||||||||||||||    
T  25801218 aagatttaaagtccaatatttaacattattttt 25801250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 39678240 - 39678200
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||| ||||||||||| ||||| ||||||||||||||||||    
T  39678240 agaggatttaaagttcgatctttaacattattttttgctca 39678200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 313
Target Start/End: Original strand, 43574794 - 43574891
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||||||||||||||||||||| |||||||| |||||||||||| | ||        |||| ||||||||| ||||||| ||||||||||||||||||    
T  43574794 atttaaagtccaatctttaacaatattttttgctcacgtttgtcaccaattttttttagaggatttaaagtccaatctttaacattattttttgctca 43574891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 30146414 - 30146515
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgct 311  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||   |||         |||| ||||||||||||||||| ||||||||||||||||    
T  30146414 aagatttaaagtccaatctttaacaatattttttactcacatttgttattaatatttttttagaggatttaaagttcaatctttaacattattttttgct 30146513  T
Q  312 ca 313  Q
    ||    
T  30146514 ca 30146515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 50232141 - 50232030
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnn--agagtatttaaagttcaatcttcaacattattttttgctc 312  Q
    |||||||||| ||||||||||||||||||||| |||||||||||  ||||          |||  ||||||||||||||||| |||||||||||||||||    
T  50232141 gatttaaagttcaatctttaacattattttttgctcacgtttgttactaatcttttttttagatgatttaaagttcaatctttaacattattttttgctc 50232042  T
Q  313 acctttgctact 324  Q
    || |||| ||||    
T  50232041 acgtttgttact 50232030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 50232204 - 50232094
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnn--agagtatttaaagttcaatcttcaacattattttttgctc 312  Q
    ||||||||||||||| |||||||||||||||| |||||||||||  ||||          |||| ||||||||||||||||| |||||||||||||||||    
T  50232204 gatttaaagtccaat-tttaacattattttttgctcacgtttgttactaatcttttttttagaggatttaaagttcaatctttaacattattttttgctc 50232106  T
Q  313 acctttgctact 324  Q
    || |||| ||||    
T  50232105 acgtttgttact 50232094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 319
Target Start/End: Original strand, 29698569 - 29698675
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa--nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctc 312  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| |||||          | |  ||||||||||||||||| |||||||||||||||||    
T  29698569 gatttaaagtccaatctttaacattatattttgctcacgtttgttgctaatctttttatcataagatttaaagttcaatctttaacattattttttgctc 29698668  T
Q  313 acctttg 319  Q
    || ||||    
T  29698669 acgtttg 29698675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 29698631 - 29698682
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa 264  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||| |||||    
T  29698631 aagatttaaagttcaatctttaacattattttttgctcacgtttgttgctaa 29698682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 30143735 - 30143778
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  30143735 gatttaaagtccaatctttaacattattttttcctcacgtttgt 30143778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 30158516 - 30158559
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  30158516 gatttaaagtccaatctttaacattattttttgctcacgtttgt 30158559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 8528809 - 8528764
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||    
T  8528809 aagatttaaagtcaaatctttaacattattttttgctcacgtttgt 8528764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 237536 - 237493
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||| ||||||||||| |||||||||||    
T  237536 gatttaaagtccaatctttaccattattttttgctcacgtttgt 237493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 237597 - 237494
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||||||||||||||||||| |||||||||||  ||||||||||  ||||        |||| ||||||||| ||||||| | |||||||||||||||||    
T  237597 gatttaaagtccaatctttaccattattttttggtcacgtttgttactaa-tttttttagaggatttaaagtccaatctttaccattattttttgctcac 237499  T
Q  315 ctttg 319  Q
     ||||    
T  237498 gtttg 237494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 14495159 - 14495116
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||| ||||||||||| |||||||||||    
T  14495159 gatttaaagtccaatctttaccattattttttgctcacgtttgt 14495116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 14495355 - 14495304
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    |||| ||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  14495355 agagaatttaaagttcaatctttaacattattttttgctcacgtttgttact 14495304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 23997851 - 23997808
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| ||| |||||||    
T  23997851 gatttaaagtccaatctttaacattattttttgctcgcgtttgt 23997808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 24162573 - 24162616
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  24162573 gatttaaagtccaatctttaacaatattttttgctcacgtttgt 24162616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 30143990 - 30144033
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||| |||||||||||||||| |||||||||||    
T  30143990 gatttaaagtccaatttttaacattattttttgctcacgtttgt 30144033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 30146734 - 30146777
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||| |||||||||||||||| |||||||||||    
T  30146734 gatttaaagtccaatttttaacattattttttgctcacgtttgt 30146777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 43574855 - 43574898
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| |||| ||||||    
T  43574855 gatttaaagtccaatctttaacattattttttgctcatgtttgt 43574898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 14495350 - 14495308
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||| ||||||||||||||||||||| |||||||||||    
T  14495350 atttaaagttcaatctttaacattattttttgctcacgtttgt 14495308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 30158391 - 30158433
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  30158391 atttaaagtccaatctttaacattattttttgctcatgtttgt 30158433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 313
Target Start/End: Complemental strand, 8528612 - 8528512
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnn--agagtatttaaagttcaatcttcaacattattttttgctc 312  Q
    ||||||||||| ||||||||||| |||||||  |||||||||||  ||||          |||| ||||||||||||||||| |||||||||||||||||    
T  8528612 gatttaaagtcaaatctttaacaatatttttcgctcacgtttgttactaatcttttttttagaggatttaaagttcaatctttaacattattttttgctc 8528513  T
Q  313 a 313  Q
    |    
T  8528512 a 8528512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 8528676 - 8528635
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgttt 256  Q
    ||||||||||||||||||||||||||||||||  ||||||||    
T  8528676 gatttaaagtccaatctttaacattattttttggtcacgttt 8528635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 20132196 - 20132237
Alignment:
Q  218 ttaaagtccaatctttaacattattttttactcacgtttgtc 259  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  20132196 ttaaagtccaatctttaacaatattttttgctcacgtttgtc 20132237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 319
Target Start/End: Original strand, 30143927 - 30144032
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||  ||||         |||| ||||||||| |||| || ||||||||||||||||||    
T  30143927 gatttaaagtacaatctttaaccttattttttactcaggtttgttactaatctttttttagaggatttaaagtccaatttttaacattattttttgctca 30144026  T
Q  314 cctttg 319  Q
    | ||||    
T  30144027 cgtttg 30144032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 319
Target Start/End: Original strand, 30146671 - 30146776
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||  ||||         |||| ||||||||| |||| || ||||||||||||||||||    
T  30146671 gatttaaagtacaatctttaaccttattttttactcaggtttgttactaatctttttttagaggatttaaagtccaatttttaacattattttttgctca 30146770  T
Q  314 cctttg 319  Q
    | ||||    
T  30146771 cgtttg 30146776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 319
Target Start/End: Original strand, 30158453 - 30158558
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||   |||         |||| ||||||||| ||||||| ||||||||||||||||||    
T  30158453 gatttaaagtacaatctttaaccttattttttactcaggtttgttattaatctttttttagaggatttaaagtccaatctttaacattattttttgctca 30158552  T
Q  314 cctttg 319  Q
    | ||||    
T  30158553 cgtttg 30158558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 237658 - 237550
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||  ||||        |||| ||||||||| ||||||| | |||||||||||| ||||    
T  237658 gatttaaagtcaaatctttaacattattttttggtcacgtttgttactaa-tttttttagaggatttaaagtccaatctttaccattattttttggtcac 237560  T
Q  315 ctttgctact 324  Q
     |||| ||||    
T  237559 gtttgttact 237550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 319
Target Start/End: Original strand, 29698825 - 29698932
Alignment:
Q  214 agatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnn--agagtatttaaagttcaatcttcaacattattttttgct 311  Q
    ||||||||||||| |||||||||| |||||||| ||||| |||||  ||||          |||| ||||||||| ||||||||| ||||||||||||||    
T  29698825 agatttaaagtccgatctttaacaatattttttgctcacatttgttactaatcttttttttagagaatttaaagtccaatcttcaccattattttttgct 29698924  T
Q  312 cacctttg 319  Q
    ||| ||||    
T  29698925 cacgtttg 29698932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 50231957 - 50231917
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  50231957 agaggatttaaagttcaatctttaacattattttttgctca 50231917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 8528548 - 8528505
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| ||||||||||||||||||||| |||| ||||||    
T  8528548 gatttaaagttcaatctttaacattattttttgctcaagtttgt 8528505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 8528935 - 8528892
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||    
T  8528935 gatttaaagtccaatctttcacattattttttgttcacgtttgt 8528892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 14495544 - 14495501
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||| |||||||||||| |||| |||||||||||    
T  14495544 gatttaaagtccaacctttaacattatattttgctcacgtttgt 14495501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 29698763 - 29698806
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||| |||||||||||||||||||||||||  ||||||||||    
T  29698763 gatttagagtccaatctttaacattattttttggtcacgtttgt 29698806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 30143800 - 30143843
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| |||||||||||| |||||||||||||| |||||    
T  30143800 gatttaaagttcaatctttaacaatattttttactcacatttgt 30143843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 30143863 - 30143906
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||| ||||||||||||||| |||| ||||||    
T  30143863 gatttaaagtccaatcattaacattattttttgctcatgtttgt 30143906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 30146479 - 30146522
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| ||||||||||||||||||||| |||| ||||||    
T  30146479 gatttaaagttcaatctttaacattattttttgctcatgtttgt 30146522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 50231953 - 50231910
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| ||||||||||||||||||||| |||| ||||||    
T  50231953 gatttaaagttcaatctttaacattattttttgctcatgtttgt 50231910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 50232267 - 50232224
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| |||||||||||| |||||||| |||||||||||    
T  50232267 gatttaaagttcaatctttaacaatattttttgctcacgtttgt 50232224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 20132327 - 20132365
Alignment:
Q  220 aaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  20132327 aaagtcgaatctttaacattattttttgctcacgtttgt 20132365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 29698891 - 29698933
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||| | ||||||||||| |||||||||||    
T  29698891 atttaaagtccaatcttcaccattattttttgctcacgtttgt 29698933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 30146608 - 30146650
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||| ||||||||||||||||||||||| |||| ||||||    
T  30146608 atttaaaatccaatctttaacattattttttgctcatgtttgt 30146650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 50232266 - 50232220
Alignment:
Q  278 atttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    ||||||||||||||||| |||| |||||||||||||| |||| ||||    
T  50232266 atttaaagttcaatctttaacaatattttttgctcacgtttgttact 50232220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 237787 - 237743
Alignment:
Q  215 gatttaaagtccaatctttaacatta-ttttttactcacgtttgt 258  Q
    |||||||||||||||||||||||| | |||||| |||||||||||    
T  237787 gatttaaagtccaatctttaacatgatttttttcctcacgtttgt 237743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 30158390 - 30158426
Alignment:
Q  277 tatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  30158390 tatttaaagtccaatctttaacattattttttgctca 30158426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 79)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 313
Target Start/End: Complemental strand, 55764187 - 55764089
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||||||||||||||||||||||||||||||| |||| ||||||  ||||        |||| |||||||||  |||||| ||||||||||||||||||    
T  55764187 gatttaaagtccaatctttaacattattttttgctcatgtttgttactaattttttttagaggatttaaagtctaatctttaacattattttttgctca 55764089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 3729987 - 3729882
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| |||||         |||| ||||||||| ||||||| | ||||||||||||||||    
T  3729987 gatttaaagtccaatttttaacattattttttgctcacgtttgttgctaatctttttttagaggatttaaagtacaatctttagcattattttttgctca 3729888  T
Q  314 cctttg 319  Q
    | ||||    
T  3729887 cgtttg 3729882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 319
Target Start/End: Complemental strand, 10727085 - 10726981
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    ||||||||| ||||||||||||||||||||| |||||||||||  ||||         |||| ||||||||||||||||| |||||||| ||||||||||    
T  10727085 atttaaagtacaatctttaacattattttttgctcacgtttgttactaatcttttttgagaggatttaaagttcaatctttaacattatattttgctcac 10726986  T
Q  315 ctttg 319  Q
     ||||    
T  10726985 gtttg 10726981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 319
Target Start/End: Complemental strand, 10940854 - 10940750
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    ||||||||| ||||||||||||||||||||| |||||||||||  ||||         |||| ||||||||||||||||| |||||||| ||||||||||    
T  10940854 atttaaagtacaatctttaacattattttttgctcacgtttgttactaatcttttttgagaggatttaaagttcaatctttaacattatattttgctcac 10940755  T
Q  315 ctttg 319  Q
     ||||    
T  10940754 gtttg 10940750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 5093532 - 5093575
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  5093532 gatttaaagtccaatctttaacattattttttcctcacgtttgt 5093575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 5093852 - 5093895
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  5093852 gatttaaagtccaatctttaacattattttttcctcacgtttgt 5093895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 49358225 - 49358122
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||||||||||||||||||||| ||||||||| |||||||||||  ||||        |||| ||||||||| ||||||| ||||||||||||||| |||    
T  49358225 gatttaaagtccaatctttaacgttattttttcctcacgtttgttactaa-tttttttagaggatttaaagtccaatctttaacattattttttgcccac 49358127  T
Q  315 ctttg 319  Q
     ||||    
T  49358126 gtttg 49358122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 10726959 - 10726913
Alignment:
Q  212 aaagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||    
T  10726959 aaagatttaaagtccaatatttaacattattttttgctcacgtttgt 10726913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 10940728 - 10940682
Alignment:
Q  212 aaagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||    
T  10940728 aaagatttaaagtccaatatttaacattattttttgctcacgtttgt 10940682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 11973377 - 11973419
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttg 257  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  11973377 gatttaaagtccaatctttaacattattttttgctcacgtttg 11973419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 3730306 - 3730261
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||    
T  3730306 aagatttaaagtctaatctttaacattattttttgctcacgtttgt 3730261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 3730370 - 3730325
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||    
T  3730370 aagatttaaagtctaatctttaacattattttttgctcacgtttgt 3730325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 5526430 - 5526385
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||    
T  5526430 aagatttaaagtccaatgtttaacattattttttgctcacgtttgt 5526385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 13021544 - 13021499
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||    
T  13021544 aagatttaaagtccaatcattaacattattttttactcgcgtttgt 13021499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 319
Target Start/End: Complemental strand, 44814940 - 44814836
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgtcgct-aannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||||||||| |||||||||||||||||||| |||||||||||  || |         |||| ||||||||||||||||| | |||||||||||||||||    
T  44814940 atttaaagtctaatctttaacattattttttgctcacgtttgttactgatctttttttagagaatttaaagttcaatctttaccattattttttgctcac 44814841  T
Q  315 ctttg 319  Q
     ||||    
T  44814840 gtttg 44814836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 44815322 - 44815211
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa--nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctc 312  Q
    ||||||||||||||||||||||||||| |||| |||||||||||  ||||          | ||||||||||||  |||||| |||||||||||||||||    
T  44815322 gatttaaagtccaatctttaacattatattttcctcacgtttgttactaatctttttttcatagtatttaaagtcaaatctttaacattattttttgctc 44815223  T
Q  313 acctttgctact 324  Q
    || |||| ||||    
T  44815222 acgtttgttact 44815211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 3730174 - 3730131
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||| ||||||||||| |||||||||||    
T  3730174 gatttaaagtccaatctttagcattattttttgctcacgtttgt 3730131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 3730436 - 3730385
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    |||| ||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  3730436 agaggatttaaagttcaatctttaacattattttttgctcacgtttgttact 3730385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 3730432 - 3730389
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| ||||||||||||||||||||| |||||||||||    
T  3730432 gatttaaagttcaatctttaacattattttttgctcacgtttgt 3730389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 5526300 - 5526257
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  5526300 gatttaaagtccaatctttaacaatattttttgctcacgtttgt 5526257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 10727090 - 10727039
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |||| ||||    
T  10727090 agagtatttaaagtacaatctttaacattattttttgctcacgtttgttact 10727039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 10940859 - 10940808
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |||| ||||    
T  10940859 agagtatttaaagtacaatctttaacattattttttgctcacgtttgttact 10940808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 11036957 - 11037000
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||| |||||||||| |||||||||||    
T  11036957 gatttaaagtccaatctttaaaattattttttgctcacgtttgt 11037000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 12217390 - 12217347
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  12217390 gatttaaagtccaacctttaacattattttttgctcacgtttgt 12217347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 12218052 - 12218009
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||    
T  12218052 gatttaaagtccaatatttaacattattttttactcatgtttgt 12218009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 12218245 - 12218202
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||||||| |||| |||||||||||    
T  12218245 gatttaaagtccaatctttaacattatattttgctcacgtttgt 12218202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 12218309 - 12218266
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| |||| ||||||    
T  12218309 gatttaaagtccaatctttaacattattttttgctcaagtttgt 12218266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 13021349 - 13021306
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  13021349 gatttaaagtccaatctttaacaatattttttactcacatttgt 13021306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 38001886 - 38001843
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  38001886 gatttaaagtccaatctttaacaatattttttgctcacgtttgt 38001843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 49358164 - 49358121
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| | |||||||||    
T  49358164 gatttaaagtccaatctttaacattattttttgcccacgtttgt 49358121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 55828630 - 55828587
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| |||| ||||||    
T  55828630 gatttaaagtccaatctttaacattattttttgctcatgtttgt 55828587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 3729860 - 3729818
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  3729860 atttaaagtccaatctttaccattattttttgctcacgtttgt 3729818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 12218183 - 12218137
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgtc 259  Q
    |||||||||  || |||||||||||||||||||||||||||||||||    
T  12218183 aagatttaatttcgaatctttaacattattttttactcacgtttgtc 12218137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 44672648 - 44672758
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||  ||||         |||| ||||||||||||||||| || ||| |||||||||||    
T  44672648 gatttaaagaccaatctttaacaatattttttgctcacgtttgttactaatctttttttagaggatttaaagttcaatctttaaaatttttttttgctca 44672747  T
Q  314 cctttgctact 324  Q
    | |||| ||||    
T  44672748 cgtttgttact 44672758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 11973927 - 11973968
Alignment:
Q  217 tttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  11973927 tttaaagtccaatctttaacaatattttttgctcacgtttgt 11973968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 44815132 - 44815095
Alignment:
Q  214 agatttaaagtccaatctttaacattattttttactca 251  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  44815132 agatttaaagtccaatctttaacattattttttgctca 44815095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 3730111 - 3730007
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||||||||||||| |||||||||||||||||  ||| |||||| |||||        |||| |||||||||  |||||| |||| |||||||||| |||    
T  3730111 gatttaaagtccaacctttaacattattttttggtcatgtttgttgctaatcttttttagaggatttaaagtctaatctttaacaatattttttgcacac 3730012  T
Q  315 ctttg 319  Q
     ||||    
T  3730011 atttg 3730007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 308
Target Start/End: Complemental strand, 38002015 - 38001920
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgcta--annnnnnnnagagtatttaaagttcaatcttcaacattatttttt 308  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||  |||  |        |||| ||||||||||||||||| |||||||||||||    
T  38002015 gatttaaagtccaatctttaacaatattttttgctcacatttgttactaatatttattttagaggatttaaagttcaatctttaacattatttttt 38001920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 3729924 - 3729881
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||    
T  3729924 gatttaaagtacaatctttagcattattttttgctcacgtttgt 3729881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 5093723 - 5093766
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||| ||||| |||| ||||||    
T  5093723 gatttaaagtccaatctttaacattactttttgctcatgtttgt 5093766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 10726698 - 10726655
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||  |||||||||| |||||||||||    
T  10726698 gatttaaagtccaatctttactattattttttgctcacgtttgt 10726655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 10726760 - 10726717
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||    
T  10726760 gatttaaagtccaatctttaacaatattttttgttcacgtttgt 10726717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 10726824 - 10726781
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| ||||||||||||| ||||||| |||||||||||    
T  10726824 gatttaaagttcaatctttaacatgattttttgctcacgtttgt 10726781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 10727023 - 10726980
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| |||||||||||||||| |||| |||||||||||    
T  10727023 gatttaaagttcaatctttaacattatattttgctcacgtttgt 10726980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 10940467 - 10940424
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||  |||||||||| |||||||||||    
T  10940467 gatttaaagtccaatctttactattattttttgctcacgtttgt 10940424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 10940529 - 10940486
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||    
T  10940529 gatttaaagtccaatctttaacaatattttttgttcacgtttgt 10940486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 10940593 - 10940550
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| ||||||||||||| ||||||| |||||||||||    
T  10940593 gatttaaagttcaatctttaacatgattttttgctcacgtttgt 10940550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 10940792 - 10940749
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| |||||||||||||||| |||| |||||||||||    
T  10940792 gatttaaagttcaatctttaacattatattttgctcacgtttgt 10940749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 11037082 - 11037125
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||| |||| |||||||| |||||||||||    
T  11037082 gatttaaagtccaatcttaaacaatattttttgctcacgtttgt 11037125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 11037267 - 11037310
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||    
T  11037267 gatttaaagtctaatctttaacattattttttgttcacgtttgt 11037310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 33729663 - 33729620
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||    
T  33729663 gatttaaagtccaatttttaacattattttttgctcatgtttgt 33729620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 44672900 - 44672943
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||    
T  44672900 gatttaaagtccagtctttaagattattttttgctcacgtttgt 44672943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 44815069 - 44815026
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| ||| |||| |||||||||||    
T  44815069 gatttaaagtccaatctttaacaatatcttttgctcacgtttgt 44815026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 49358517 - 49358474
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| | |||||| |||||||||||    
T  49358517 gatttaaagtccaatctttaacaattttttttcctcacgtttgt 49358474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 54197677 - 54197720
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||    
T  54197677 gatttaaagtctaatctttaacaatattttttgctcacgtttgt 54197720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 54197988 - 54198031
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||| || |||||||| |||||||||||    
T  54197988 gatttaaagtccaatctttaccactattttttgctcacgtttgt 54198031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 55764125 - 55764082
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||| |||||||||||||||||||| |||| ||||||    
T  55764125 gatttaaagtctaatctttaacattattttttgctcatgtttgt 55764082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 55828504 - 55828461
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||| |||||||||||||||||||| |||| ||||||    
T  55828504 gatttaaagtctaatctttaacattattttttgctcatgtttgt 55828461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 55828567 - 55828524
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||| |||||||||||||||||||| |||| ||||||    
T  55828567 gatttaaagtctaatctttaacattattttttgctcatgtttgt 55828524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 307
Target Start/End: Original strand, 5093655 - 5093689
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttt 307  Q
    |||||||||||||| ||||||||||||||||||||    
T  5093655 agagtatttaaagtccaatcttcaacattattttt 5093689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 10726823 - 10726777
Alignment:
Q  278 atttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    ||||||||||||||||| ||||| ||||||||||||| |||| ||||    
T  10726823 atttaaagttcaatctttaacatgattttttgctcacgtttgttact 10726777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #62
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 10940592 - 10940546
Alignment:
Q  278 atttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    ||||||||||||||||| ||||| ||||||||||||| |||| ||||    
T  10940592 atttaaagttcaatctttaacatgattttttgctcacgtttgttact 10940546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #63
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 11973378 - 11973424
Alignment:
Q  278 atttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    ||||||||| ||||||| ||||||||||||||||||| |||| ||||    
T  11973378 atttaaagtccaatctttaacattattttttgctcacgtttgatact 11973424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #64
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 246
Target Start/End: Original strand, 11973796 - 11973826
Alignment:
Q  216 atttaaagtccaatctttaacattatttttt 246  Q
    |||||||||||||||||||||||||||||||    
T  11973796 atttaaagtccaatctttaacattatttttt 11973826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #65
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 44672838 - 44672880
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||| |||||||||||||| |||||||| |||||||||||    
T  44672838 atttaaattccaatctttaacaatattttttgctcacgtttgt 44672880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #66
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 44814877 - 44814835
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||    
T  44814877 atttaaagttcaatctttaccattattttttgctcacgtttgt 44814835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #67
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 246
Target Start/End: Complemental strand, 55764312 - 55764282
Alignment:
Q  216 atttaaagtccaatctttaacattatttttt 246  Q
    |||||||||||||||||||||||||||||||    
T  55764312 atttaaagtccaatctttaacattatttttt 55764282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #68
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 246
Target Start/End: Complemental strand, 55828756 - 55828726
Alignment:
Q  216 atttaaagtccaatctttaacattatttttt 246  Q
    |||||||||||||||||||||||||||||||    
T  55828756 atttaaagtccaatctttaacattatttttt 55828726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #69
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 11973441 - 11973482
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgttt 256  Q
    ||||||||||| |||||||||||||||||||| ||| |||||    
T  11973441 gatttaaagtcaaatctttaacattattttttgctctcgttt 11973482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #70
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 11973793 - 11973830
Alignment:
Q  275 agtatttaaagttcaatcttcaacattattttttgctc 312  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  11973793 agtatttaaagtccaatctttaacattattttttgctc 11973830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #71
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 11974333 - 11974374
Alignment:
Q  217 tttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||| || ||||| |||||||||||    
T  11974333 tttaaagtccaatctttaacaatactttttgctcacgtttgt 11974374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #72
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 54197924 - 54197965
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||| ||||||||||||||||| ||||| |||||||||||||    
T  54197924 agaggatttaaagttcaatctttaacataattttttgctcac 54197965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #73
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 54197928 - 54197969
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgttt 256  Q
    |||||||||| ||||||||||||| ||||||| |||||||||    
T  54197928 gatttaaagttcaatctttaacataattttttgctcacgttt 54197969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #74
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 5525359 - 5525319
Alignment:
Q  279 tttaaagttcaatcttcaacattattttttgctcacctttg 319  Q
    ||||||||  |||||||||||||||||||||||||| ||||    
T  5525359 tttaaagtataatcttcaacattattttttgctcacgtttg 5525319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #75
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 11973252 - 11973292
Alignment:
Q  218 ttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||| |||||||||||||||| |||| ||||||    
T  11973252 ttaaagtccaatttttaacattattttttgctcaagtttgt 11973292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #76
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 11974051 - 11974095
Alignment:
Q  214 agatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||| ||||||||| ||||| ||||| |||||||||||    
T  11974051 agatttaaagttcaatctttaccattaatttttgctcacgtttgt 11974095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #77
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 12218313 - 12218273
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||| ||||||||| ||||||| ||||||||||||||||||    
T  12218313 agaggatttaaagtccaatctttaacattattttttgctca 12218273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #78
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 55764191 - 55764151
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||| ||||||||| ||||||| ||||||||||||||||||    
T  55764191 agaggatttaaagtccaatctttaacattattttttgctca 55764151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #79
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 55828634 - 55828594
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||| ||||||||| ||||||| ||||||||||||||||||    
T  55828634 agaggatttaaagtccaatctttaacattattttttgctca 55828594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 319
Target Start/End: Original strand, 28263464 - 28263569
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||||||||||||||||||| || ||||||||||||||||||||  ||||         |||| ||||||||| ||||||| ||||||||||||||||||    
T  28263464 gatttaaagtccaatctttagcaatattttttactcacgtttgttactaatctttttttagaggatttaaagtccaatctttaacattattttttgctca 28263563  T
Q  314 cctttg 319  Q
    | ||||    
T  28263564 cgtttg 28263569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 1197575 - 1197465
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnn--agagtatttaaagttcaatcttcaacattattttttgctc 312  Q
    ||||||||||||||| |||||||||||||||| |||||||||||  ||||          |||| ||||||||||||||||| |||||||||||||||||    
T  1197575 gatttaaagtccaat-tttaacattattttttgctcacgtttgttactaatcttttttttagaggatttaaagttcaatctttaacattattttttgctc 1197477  T
Q  313 acctttgctact 324  Q
    || |||| ||||    
T  1197476 acgtttgttact 1197465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 28263527 - 28263570
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  28263527 gatttaaagtccaatctttaacattattttttgctcacgtttgt 28263570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 38938358 - 38938401
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  38938358 gatttaaagtccaatctttaacattattttttgctcacgtttgt 38938401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 42775152 - 42775193
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgttt 256  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  42775152 gatttaaagtccaatctttaacattattttttgctcacgttt 42775193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 28263208 - 28263251
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||| ||||| |||||||||||    
T  28263208 gatttaaagtccaatctttaacattagtttttgctcacgtttgt 28263251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 38938420 - 38938465
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||| || |||||||| |||||||||||    
T  38938420 aagatttaaagtccaatctttaccactattttttgctcacgtttgt 38938465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 3160052 - 3160094
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  3160052 gatttaaagtccaatctttaacaatatttttt-ctcacgtttgt 3160094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 14655526 - 14655577
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    |||| ||||||| | ||||||||||||||||||||||||||| |||| ||||    
T  14655526 agaggatttaaaatccaatcttcaacattattttttgctcacgtttgttact 14655577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 14655530 - 14655573
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||    
T  14655530 gatttaaaatccaatcttcaacattattttttgctcacgtttgt 14655573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 38938354 - 38938405
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    |||| ||||||||| ||||||| ||||||||||||||||||| |||| ||||    
T  38938354 agaggatttaaagtccaatctttaacattattttttgctcacgtttgttact 38938405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 28222417 - 28222379
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgct 311  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  28222417 agaggatttaaagttcaatctttaacattattttttgct 28222379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 28604399 - 28604365
Alignment:
Q  224 tccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| |||||||||||    
T  28604399 tccaatctttaacattattttttgctcacgtttgt 28604365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 1197638 - 1197597
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgttt 256  Q
    |||||||||| |||||||||||| |||||||| |||||||||    
T  1197638 gatttaaagttcaatctttaacaatattttttgctcacgttt 1197597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 42775148 - 42775189
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||| ||||||||| ||||||| |||||||||||||||||||    
T  42775148 agaggatttaaagtccaatctttaacattattttttgctcac 42775189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 1197637 - 1197601
Alignment:
Q  278 atttaaagttcaatcttcaacattattttttgctcac 314  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  1197637 atttaaagttcaatctttaacaatattttttgctcac 1197601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 14655586 - 14655626
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgttt 256  Q
    |||||||||| |||| ||||||||||||||| |||||||||    
T  14655586 atttaaagtcaaatccttaacattattttttgctcacgttt 14655626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 28263403 - 28263439
Alignment:
Q  278 atttaaagttcaatcttcaacattattttttgctcac 314  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  28263403 atttaaagttcaatctttaacattattttttggtcac 28263439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 42775083 - 42775119
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttg 309  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  42775083 agaggatttaaagttcaatctttaacattattttttg 42775119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 319
Target Start/End: Original strand, 16876 - 16980
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    ||||||||||||||||||||||||||||||||  ||||||||||  ||||        |||| ||||||||| ||||||| |  ||||||||||||||||    
T  16876 gatttaaagtccaatctttaacattattttttgatcacgtttgttactaattttttttagaggatttaaagtccaatctttactattattttttgctcac 16975  T
Q  315 ctttg 319  Q
     ||||    
T  16976 gtttg 16980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 16938 - 16981
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||  |||||||||| |||||||||||    
T  16938 gatttaaagtccaatctttactattattttttgctcacgtttgt 16981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 16642 - 16684
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||| |||||||||||||||| |||| ||||||    
T  16642 atttaaagtccaatatttaacattattttttgctcatgtttgt 16684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 314
Target Start/End: Complemental strand, 24432671 - 24432571
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa-nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    ||||||||||||||||||||||||||||||||  ||||||||||  ||||         |||| ||||||||||||||||| | ||||||||||||||||    
T  24432671 gatttaaagtccaatctttaacattattttttgttcacgtttgttactaatctttttttagaggatttaaagttcaatctttaccattattttttgctca 24432572  T
Q  314 c 314  Q
    |    
T  24432571 c 24432571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 24410471 - 24410428
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  24410471 gatttaaagtctaatctttaacattattttttactcacgtttgt 24410428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 24410282 - 24410230
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttgctactc 325  Q
    ||||||||||||||||||| || ||||||||||||||||||| |||| |||||    
T  24410282 agagtatttaaagttcaatatttaacattattttttgctcacatttgttactc 24410230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 24409894 - 24409851
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||| |||||||||||| |||||||||||    
T  24409894 gatttaaagtccaatcttttacattattttttgctcacgtttgt 24409851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 33848532 - 33848572
Alignment:
Q  218 ttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  33848532 ttaaagtccaatctttaatattattttttgctcacgtttgt 33848572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 246
Target Start/End: Original strand, 27023151 - 27023182
Alignment:
Q  215 gatttaaagtccaatctttaacattatttttt 246  Q
    ||||||||||||||||||||||||||||||||    
T  27023151 gatttaaagtccaatctttaacattatttttt 27023182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 241
Target Start/End: Complemental strand, 24410410 - 24410382
Alignment:
Q  213 aagatttaaagtccaatctttaacattat 241  Q
    |||||||||||||||||||||||||||||    
T  24410410 aagatttaaagtccaatctttaacattat 24410382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 24432911 - 24432865
Alignment:
Q  215 gatttaaagtccaatctttaacat---tattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||||   |||||||| |||||||||||    
T  24432911 gatttaaagtccaatctttaacattattattttttgctcacgtttgt 24432865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 10928321 - 10928217
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||||||||| ||||||||||||||||||||| |||| ||||||  ||||        |||| ||||||||| ||||||| | |||||||||||||||||    
T  10928321 gatttaaagttcaatctttaacattattttttgctcatgtttgttactaatcttttttagaggatttaaagtccaatctttaccattattttttgctcac 10928222  T
Q  315 ctttg 319  Q
     ||||    
T  10928221 gtttg 10928217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 313
Target Start/End: Complemental strand, 10928384 - 10928285
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnn-agagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||  ||||         |||| ||||||||||||||||| ||||||||||||||||||    
T  10928384 gatttaaagtccaatctttaacaatattttttgctcatgtttgttactaatatttttttagaggatttaaagttcaatctttaacattattttttgctca 10928285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 16306174 - 16306217
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  16306174 gatttaaagtccaatctttaacattattttttcctcacgtttgt 16306217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 324
Target Start/End: Original strand, 27900825 - 27900931
Alignment:
Q  218 ttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcacctt 317  Q
    |||||||||||||||||||||||||||||  ||||||||||  ||||        |||| ||||||||| ||||||| |||||||||  |||||||| ||    
T  27900825 ttaaagtccaatctttaacattattttttgatcacgtttgttactaatttcttttagaggatttaaagtccaatctttaacattattggttgctcacgtt 27900924  T
Q  318 tgctact 324  Q
    || ||||    
T  27900925 tgttact 27900931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 2537669 - 2537560
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||||||||| |||||||||||||||||||||  ||||||||||  ||||        |||||||||||||| ||||||| || | || |||||||||||    
T  2537669 gatttaaagtacaatctttaacattatttttttgtcacgtttgttactaattttttttagagtatttaaagtccaatctttaaaaatactttttgctcac 2537570  T
Q  315 ctttgctact 324  Q
     |||| ||||    
T  2537569 gtttgttact 2537560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 16306108 - 16306153
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||    
T  16306108 aagatttaaagttcaatctttaacattatttttttctcacgtttgt 16306153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 2438317 - 2438357
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgttt 256  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  2438317 atttaaagtccaatctttaacattattttttattcacgttt 2438357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 319
Target Start/End: Original strand, 2438474 - 2438578
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||  | ||        |||| ||||||||| |||| || |||||||||||||||||||    
T  2438474 gatttaaagtctaatctttaacaatattttttgctcacgtttgttaccaattttttttagaggatttaaagtccaatatttaacattattttttgctcac 2438573  T
Q  315 ctttg 319  Q
     ||||    
T  2438574 gtttg 2438578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 2438252 - 2438295
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  2438252 gatttaaagtccaatctttaacattatttttggctcacgtttgt 2438295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 2438536 - 2438579
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||| |||||||||||||||| |||||||||||    
T  2438536 gatttaaagtccaatatttaacattattttttgctcacgtttgt 2438579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 10928259 - 10928216
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||| ||||||||||| |||||||||||    
T  10928259 gatttaaagtccaatctttaccattattttttgctcacgtttgt 10928216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 14894790 - 14894747
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||| ||||||| |||||||||||    
T  14894790 gatttaaagtccaatctttaacatcattttttgctcacgtttgt 14894747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 16306380 - 16306337
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||||||| |||| |||||||||||    
T  16306380 gatttaaagtccaatctttaacattatattttgctcacgtttgt 16306337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 32249642 - 32249685
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  32249642 gatttaaagtcaaatctttaacattattttttgctcacgtttgt 32249685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 2537737 - 2537692
Alignment:
Q  213 aagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||    
T  2537737 aagatttaaagtccaatatttaacattattttttgctcacgattgt 2537692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 10928442 - 10928405
Alignment:
Q  221 aagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||||||||| |||||||||||    
T  10928442 aagtccaatctttaacattattttttgctcacgtttgt 10928405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 324
Target Start/End: Complemental strand, 10928575 - 10928467
Alignment:
Q  218 ttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnn--agagtatttaaagttcaatcttcaacattattttttgctcacc 315  Q
    |||||||||||||||||||| ||||||||  ||||||||||  ||||          |||| ||||||||||||||||  |||||||||||||||||||     
T  10928575 ttaaagtccaatctttaacaatattttttgatcacgtttgttactaatcttttttttagaggatttaaagttcaatctctaacattattttttgctcacg 10928476  T
Q  316 tttgctact 324  Q
    |||| ||||    
T  10928475 tttgttact 10928467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 314
Target Start/End: Complemental strand, 11990064 - 11990023
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    |||| ||||||||||||||||| |||||||||||||||||||    
T  11990064 agaggatttaaagttcaatctttaacattattttttgctcac 11990023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 17589345 - 17589386
Alignment:
Q  217 tttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  17589345 tttaaagtccaatctttaacaatatttttttctcacgtttgt 17589386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 2537481 - 2537438
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| ||||||||| ||||||||||||||| |||||||    
T  2537481 gatttaaagttcaatctttatcattattttttactcgcgtttgt 2537438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 3676705 - 3676662
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||| ||||| ||||||||||| |||||||||||    
T  3676705 gatttaaagtccaaactttaccattattttttgctcacgtttgt 3676662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 3677032 - 3676989
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||| ||||| ||||||||||| |||||||||||    
T  3677032 gatttaaagtccaaactttaccattattttttgctcacgtttgt 3676989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 3677159 - 3677116
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||    
T  3677159 gatttaaagtccaatctttaacaatattttttgatcacgtttgt 3677116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 3677382 - 3677339
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||||||||||   |||||||||||    
T  3677382 gatttaaagtccaatctttaacattattttcggctcacgtttgt 3677339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 10928514 - 10928471
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| |||||| |||||||||||||| |||||||||||    
T  10928514 gatttaaagttcaatctctaacattattttttgctcacgtttgt 10928471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 17589851 - 17589894
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||||||||| |||||||||||  ||||||||||    
T  17589851 gatttaaagtccaatctttaccattattttttgttcacgtttgt 17589894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 23915118 - 23915161
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||| |||||||||| |||| ||||||    
T  23915118 gatttaaagtccaatctttaatattattttttgctcatgtttgt 23915161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 23915183 - 23915226
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||||||| |||||||||||||||||  ||||||||||    
T  23915183 gatttaaagtccaacctttaacattatttttttgtcacgtttgt 23915226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 27900570 - 27900613
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||    
T  27900570 gatttaaagtctaatctttaacaatattttttgctcacgtttgt 27900613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 27900884 - 27900927
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||||||||  || |||||||||||    
T  27900884 gatttaaagtccaatctttaacattattggttgctcacgtttgt 27900927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 16306111 - 16306157
Alignment:
Q  278 atttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    ||||||||||||||||| ||||||||||||| ||||| |||| ||||    
T  16306111 atttaaagttcaatctttaacattatttttttctcacgtttgttact 16306157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 19709337 - 19709383
Alignment:
Q  212 aaagatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||| ||||||| ||||||||||||| | |||||||||    
T  19709337 aaagatttaaagttcaatcttaaacattattttttgcgcacgtttgt 19709383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 19709341 - 19709387
Alignment:
Q  278 atttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    ||||||||||||||||| ||||||||||||||| ||| |||| ||||    
T  19709341 atttaaagttcaatcttaaacattattttttgcgcacgtttgttact 19709387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 175085 - 175126
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgttt 256  Q
    |||||||||| |||||||||| ||||||||||||||| ||||    
T  175085 gatttaaagttcaatctttaaaattattttttactcatgttt 175126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 10928637 - 10928608
Alignment:
Q  215 gatttaaagtccaatctttaacattatttt 244  Q
    ||||||||||||||||||||||||||||||    
T  10928637 gatttaaagtccaatctttaacattatttt 10928608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 11990060 - 11990023
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcac 252  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  11990060 gatttaaagttcaatctttaacattattttttgctcac 11990023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 17589598 - 17589639
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgttt 256  Q
    |||||||||||||||||||||||||| ||||  |||||||||    
T  17589598 gatttaaagtccaatctttaacattacttttagctcacgttt 17589639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 27900945 - 27900978
Alignment:
Q  213 aagatttaaagtccaatctttaacattatttttt 246  Q
    |||||||||||||||||||||| |||||||||||    
T  27900945 aagatttaaagtccaatctttatcattatttttt 27900978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 313
Target Start/End: Complemental strand, 48536 - 48439
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctca 313  Q
    |||||||||| |||||||||||| |||||||| |||||||| ||  ||||        |||| ||||||||||||||||| ||||||||||||||||||    
T  48536 gatttaaagttcaatctttaacaatattttttgctcacgttagttactaatcttttt-agaggatttaaagttcaatctttaacattattttttgctca 48439  T

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Target: scaffold0086; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 48852 - 48743
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaannnnnnnnagagtatttaaagttcaatcttcaacattattttttgctcac 314  Q
    ||||||||||| |||||||||||||||||||| |||||||||||  ||||        |||| |||||||||  ||| || |||| ||||||||||||||    
T  48852 gatttaaagtcaaatctttaacattattttttgctcacgtttgttactaatattttttagaggatttaaagtcgaatgtttaacaatattttttgctcac 48753  T
Q  315 ctttgctact 324  Q
     |||| ||||    
T  48752 gtttgttact 48743  T

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Target: scaffold0086; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 314
Target Start/End: Complemental strand, 48600 - 48499
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgtcgctaa--nnnnnnnnagagtatttaaagttcaatcttcaacattattttttgctc 312  Q
    ||||||||||||||||||||||| || ||||| |||||||||||  ||||          |||| ||||||||||||||||| |||| ||||||||||||    
T  48600 gatttaaagtccaatctttaacaataatttttgctcacgtttgttactaatctttcttttagaggatttaaagttcaatctttaacaatattttttgctc 48501  T
Q  313 ac 314  Q
    ||    
T  48500 ac 48499  T

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Target: scaffold0086; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 48475 - 48432
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    |||||||||| ||||||||||||||||||||| |||| ||||||    
T  48475 gatttaaagttcaatctttaacattattttttgctcatgtttgt 48432  T

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Target: scaffold0086; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 48726 - 48683
Alignment:
Q  215 gatttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||    
T  48726 gatttaaagtccaatctttaacaatattttttgctcatgtttgt 48683  T

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Target: scaffold0025 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 3125 - 3176
Alignment:
Q  273 agagtatttaaagttcaatcttcaacattattttttgctcacctttgctact 324  Q
    |||| ||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  3125 agagaatttaaagttcaatctttaacattattttttgctcacgtttgttact 3176  T

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Target: scaffold0025; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 3130 - 3172
Alignment:
Q  216 atttaaagtccaatctttaacattattttttactcacgtttgt 258  Q
    ||||||||| ||||||||||||||||||||| |||||||||||    
T  3130 atttaaagttcaatctttaacattattttttgctcacgtttgt 3172  T

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