View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6351_low_10 (Length: 330)
Name: NF6351_low_10
Description: NF6351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6351_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 8258527 - 8258829
Alignment:
| Q |
18 |
aattggagcttcctttgatttttccttactcttttgtttctctaaagatgaagatttcaatttagatgatttttcatctaaatcagaaacttgagatgat |
117 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8258527 |
aattggagctccctttgatttttccttactcttttgtttctctaaagatgaagatttcaatttagatgatttttcatcataatcagaaacttgagatgat |
8258626 |
T |
|
| Q |
118 |
gagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccataaaa-aagtgatttaatttgcactttgaagtgggttttttgtttatgtaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8258627 |
gagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccataaaaaaagtgatttaatttgcactttgaagtgggttttttgtttatgtaa |
8258726 |
T |
|
| Q |
217 |
gtgtgcaaagctgaaatgatttagttgtgggtttaacttcatgtaattaataacttgatctatttatagagttatcatttcatatcatatgagatatgat |
316 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8258727 |
gtgtgcaaagctgaaatgatttagttgtgggttgaacttcatgtaattaataacttgatctatttatagagttatcatttcatatcatatgagatatgat |
8258826 |
T |
|
| Q |
317 |
gat |
319 |
Q |
| |
|
||| |
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|
| T |
8258827 |
gat |
8258829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 8265600 - 8265895
Alignment:
| Q |
18 |
aattggagcttcctttgatttttccttactcttttgtttctctaaagatgaagatttcaatttagatgatttttcatctaaatcagaaacttgagatgat |
117 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
8265600 |
aattggagctccctttgatttttccttactcttttgtttctctaaagatgaagatttcaatttagatgatttttcatcataatcagaaacttgagacgat |
8265699 |
T |
|
| Q |
118 |
gagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccat-aaaaaagtgatttaatttgcactttgaagtgggttttttgtttatgtaa |
216 |
Q |
| |
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|||| | |||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
8265700 |
gagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccataaaaaaagtgatttaatttgcactttgaagtgggtttcttgtttatgtaa |
8265799 |
T |
|
| Q |
217 |
gtgtgcaaagctgaaatgatttagttgtgggtttaacttcatgtaattaataacttgatctatttatagagttatcatttcatatcatatgagatatgat |
316 |
Q |
| |
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||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| ||||| ||||||||||||||||| ||| |
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| T |
8265800 |
gtgtggaaagctgaaatgatttagttgtgggttgaacttcatgtaat---taacttgatccatttataga--catcatatcatatcatatgagataggat |
8265894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 8260634 - 8260899
Alignment:
| Q |
18 |
aattggagcttcctttgatttttccttactcttttgtttctctaaagatgaagatttcaatttagatgatttttcatctaaatcagaaacttgagatgat |
117 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
8260634 |
aattggagctctctttgatttttctttgctcttttgtttctctaaagatgaagatttcaatttagatgatttttcatcataatcagaaacttgagatgat |
8260733 |
T |
|
| Q |
118 |
gagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccataaaaaagtgatttaatttgcactttgaagtgggttttttgtttatgtaag |
217 |
Q |
| |
|
|||| | |||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
8260734 |
gagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcactttgaagagggttttctgtttatgtaag |
8260833 |
T |
|
| Q |
218 |
tgtgcaaagctgaaatgatttagttgtgggtttaacttcatgtaattaataacttgatctatttataga |
286 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||||||| |
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|
| T |
8260834 |
tgtggaaagctgaaatgatttagttgtaggttgaacttcatgtagt---taacttgatctatttataga |
8260899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 8352808 - 8352964
Alignment:
| Q |
34 |
gatttttccttactcttttgtttctctaaagatgaagatttcaatttagatgatttttcatctaaatcagaaacttgagatgatgagtttgaagaatggc |
133 |
Q |
| |
|
||||||||||| |||||| ||| ||| |||||||||||||| ||| ||||||||||||||| ||||| |||||||||| |||||||| |||||| | | |
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|
| T |
8352808 |
gatttttcctttctctttaatttttctgaagatgaagatttcgattgagatgatttttcatcataatcataaacttgagaagatgagttcgaagaaggac |
8352907 |
T |
|
| Q |
134 |
caaagcaacttaaaatggatgaaatcaaagccataaaaaagtgatttaatttgcact |
190 |
Q |
| |
|
|||||||| | |||| ||||||||||||||||| |||||||||||| |||||||| |
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|
| T |
8352908 |
caaagcaattgaaaaatgatgaaatcaaagccatcaaaaagtgatttggtttgcact |
8352964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 8356359 - 8356482
Alignment:
| Q |
18 |
aattggagcttcctttgatttttccttactcttttgtttctctaaagatgaagatttcaatttagatgatttttcatctaaatcagaaacttgagatgat |
117 |
Q |
| |
|
|||||||||| || ||||||||||||| |||||| |||||||| ||| ||||||||||| || |||||| |||| | | |||||||||||||||||||| |
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|
| T |
8356359 |
aattggagctcccattgatttttccttgctctttggtttctctgaagttgaagatttcatttgagatgaattttgagcataatcagaaacttgagatgat |
8356458 |
T |
|
| Q |
118 |
gagtttgaagaatggccaaagcaa |
141 |
Q |
| |
|
||||||||||| | ||||||||| |
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| T |
8356459 |
gagtttgaagagagaccaaagcaa |
8356482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 8350129 - 8350220
Alignment:
| Q |
99 |
atcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccataaaaaagtgatttaatttgcact |
190 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | ||||| ||| | || | ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
8350129 |
atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaaaaagtgatttaatttgcact |
8350220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 8360532 - 8360642
Alignment:
| Q |
18 |
aattggagcttcctttgatttttccttactcttttgtttctctaaagatgaagatttcaatttagatgatttttcatctaaatcagaaacttgagatgat |
117 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||| |||||||| ||| ||||||||||| || |||||| |||||| | |||||||||||||||||||| |
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|
| T |
8360532 |
aattggagctcctattgatttttccttgatctttggtttctctgaagttgaagatttcatttgagatgaattttcaacataatcagaaacttgagatgat |
8360631 |
T |
|
| Q |
118 |
gagtttgaaga |
128 |
Q |
| |
|
|||||||||| |
|
|
| T |
8360632 |
aagtttgaaga |
8360642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 8252975 - 8253043
Alignment:
| Q |
99 |
atcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccat |
167 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | ||||| ||| | || | ||||||||||||||||| |
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|
| T |
8252975 |
atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccat |
8253043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 8252912 - 8252954
Alignment:
| Q |
18 |
aattggagcttcctttgatttttccttactcttttgtttctct |
60 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| |||||||| |
|
|
| T |
8252912 |
aattggagctccctttgatttttccttcctctttggtttctct |
8252954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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