View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6351_low_14 (Length: 242)
Name: NF6351_low_14
Description: NF6351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6351_low_14 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 45536078 - 45535857
Alignment:
| Q |
21 |
tatctctccctatcttttgttgagcatatcttcttggatttcctccctttttctattctaataatagtgtatcattaaaaatttcgacctacatccgtaa |
120 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45536078 |
tatctctccctatattttgttgagcatatcttcttggatttcctccctttttctattctaataatagtgtatcattaaaaatttcgacctacatccgtaa |
45535979 |
T |
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| Q |
121 |
ttcagaaaccaaaccaacaaatggtttagataagttcccaagtgttttaattaatttctagactcatgtaaatccctgtatacccgttgaaatcattaat |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45535978 |
ttcagaaaccaaaccaacaaatggtttagataagttcccaagtgttttaattaatttctagactcatgtaaatccttgtatacccgttgaaatcattaat |
45535879 |
T |
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| Q |
221 |
tccaatcattctctcatttcaa |
242 |
Q |
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|||||||||||||||||||||| |
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| T |
45535878 |
tccaatcattctctcatttcaa |
45535857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 44337618 - 44337767
Alignment:
| Q |
20 |
atatctctccctatcttttgttgagcatatcttcttggatttcctccctttttctattctaataatagtgtatcattaaaaatttcgacctacatccgta |
119 |
Q |
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|||||||| ||||||| ||||| |||| |||||||||| |||| ||||| || |||||||||||||||||||||||| ||| || || || ||| |
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| T |
44337618 |
atatctctttctatcttcagttgaacatagtttcttggattccctcactttt-ctgttctaataatagtgtatcattaaattttttgaaatatatttgta |
44337716 |
T |
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| Q |
120 |
attcagaaa-ccaaaccaacaaatggtttagataagttcccaagtgttttaa |
170 |
Q |
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| T |
44337717 |
attcagaaaaccaaactaacaa-tggtttagataagttcccaagtgttttaa |
44337767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 31 - 241
Target Start/End: Original strand, 24563687 - 24563892
Alignment:
| Q |
31 |
tatcttttgttgagcatatcttcttggatttcctccctttttctattctaataatagtgtatcattaaaaatttcgacctacatccgtaattcagaaacc |
130 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||| || | |||||||||||||| ||||||| |
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| T |
24563687 |
tatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaattaagaaacc |
24563786 |
T |
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| Q |
131 |
aaaccaacaaatggtttagataagttcccaagtgttttaattaatttctagactcatgtaaatccctgtatacccgttgaaatcattaattccaatcatt |
230 |
Q |
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| T |
24563787 |
aaaccaac-aatggtttagataagttcgcaactgct----ttaatttctagactcacgtaaatccctgtatgcccgttgaaatcattaattccaatcatt |
24563881 |
T |
|
| Q |
231 |
ctctcatttca |
241 |
Q |
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||||||||||| |
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| T |
24563882 |
ctctcatttca |
24563892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 9798590 - 9798732
Alignment:
| Q |
26 |
ctccctatcttttgttgagcatatcttcttggatttcctccctttttctattctaataatagtgtatcattaaaaatttcgacctacatccgtaattcag |
125 |
Q |
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|||| ||||||| |||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||| |||| |||||||||||||| || |
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| T |
9798590 |
ctccttatctttagttgagcatatcttcttggattccctccatttgtctgctctaataatagtgtatcattaaaaatctcgaactacatccgtaattaag |
9798689 |
T |
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| Q |
126 |
aaaccaaaccaacaaatggtttagataagttcccaagtgtttta |
169 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
9798690 |
aaaccaaatcaac-aatggtttagataagttcccaagtgtttta |
9798732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 19190321 - 19190202
Alignment:
| Q |
21 |
tatctctccctatcttttgttgagcatatcttcttggatttcctccctttttctattctaataatagtgtatcattaaaaatttcgacctacatccgtaa |
120 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||| |||| |||||||| ||||||||||||| |||||||||| |||||| ||||| | ||| |
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| T |
19190321 |
tatctctccctatcttctgttgagcatagcttcttggattccctcactttttctgttctaataatagtacatcattaaaattttcgaaatacattcataa |
19190222 |
T |
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| Q |
121 |
ttcagaaaccaaaccaacaa |
140 |
Q |
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||||||||| |||||||||| |
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| T |
19190221 |
ttcagaaactaaaccaacaa |
19190202 |
T |
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