View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6351_low_4 (Length: 430)
Name: NF6351_low_4
Description: NF6351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6351_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 54546844 - 54547266
Alignment:
| Q |
1 |
tcatcatggaaagtagcataatatggctctaatatcaacaagtaaacttagtcagggaaacaaaactttgtaaaaaagccaaagtagttcagaacttaat |
100 |
Q |
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| T |
54546844 |
tcatcatggaaagtagcataatatggctctaatatcaacaagtaaacttagtcagggaaacaaaattttgtaaaaaagccaaagtagttcagaacttaat |
54546943 |
T |
|
| Q |
101 |
aaaactcgaaaactgtattgtagagaaatttccagtaaaggtacggctagttctcattcatatgtagtggcataagcattgatctatatcaagtttgcgg |
200 |
Q |
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| T |
54546944 |
aaaactcgaaaactgtattgtagagaaatttccagtaaaggtacggctagttctcattcatatgtagtggcataagcattgatctatatcaagtttgcgg |
54547043 |
T |
|
| Q |
201 |
catgtacttctcttgcaactcccaatttactctccaatgataaaaaacaacaactataacccataataagaggtacatgtccattgcatgttttacccca |
300 |
Q |
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| T |
54547044 |
catgtacttctcttgcaactcccaattttctctccaatgataaaa---aacaactataacccataataagaggtacatgtccattgcatgttttacccca |
54547140 |
T |
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| Q |
301 |
ttttggctacaaacccattgcacaaatgaatatttgaagcacaagcaaacaaatatctaaaattaacataccagacttcattcttattcacattaattta |
400 |
Q |
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| T |
54547141 |
ttttggctacaaacccattgcacgaatgaatatttgaagcacaagcaaacaaatatctaaaattaacataccagacttcattcttattcacattaattta |
54547240 |
T |
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| Q |
401 |
tatggaaaataatatgatgatgtcca |
426 |
Q |
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| T |
54547241 |
tatggaaaataatatgatgatgtcca |
54547266 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 368 - 418
Target Start/End: Complemental strand, 42642096 - 42642046
Alignment:
| Q |
368 |
ataccagacttcattcttattcacattaatttatatggaaaataatatgat |
418 |
Q |
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| T |
42642096 |
ataccagacttcattcttattcactttaattcatatagaaaataatatgat |
42642046 |
T |
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