View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6351_low_9 (Length: 346)
Name: NF6351_low_9
Description: NF6351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6351_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 35373559 - 35373685
Alignment:
| Q |
10 |
caattcggaatgtcttacatccgggaagtgaaataaaatcaaaccaagttcaaaaaatgccttttagcatgcatgcttaattcttctactaaattttaac |
109 |
Q |
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| T |
35373559 |
caattcggaatgtcttacatccgggaagtgaaataaaatcaaaccaagttcaaaaaatgccttttagcatgcatgcttaattcttctactaaattttaac |
35373658 |
T |
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| Q |
110 |
gttcaaacctcaattaagattattaca |
136 |
Q |
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| T |
35373659 |
gttcaaacctcaattaagattattaca |
35373685 |
T |
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Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 35373795 - 35373870
Alignment:
| Q |
251 |
cttccactcgataattatatttgaggtgtattgaacattaaatatatcacctctctaaaacgatatttgaatattg |
326 |
Q |
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| T |
35373795 |
cttccactcgataattatatttgaggtgtattgaacattaaatatatcacctctctaaaacgatatttgaatattg |
35373870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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