View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6352_low_3 (Length: 306)
Name: NF6352_low_3
Description: NF6352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6352_low_3 |
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| [»] scaffold0014 (1 HSPs) |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 51389747 - 51389912
Alignment:
| Q |
26 |
ttacatgaactaaccacacagcgcagcataacatacaccgatatccacaaacaaaaagtcccttacatatgattcaaagtcttacaaagccaatctgaat |
125 |
Q |
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| T |
51389747 |
ttacataaacaaaccacacaacgcagcataacatacaccgatagccacaaagaaatagtccctcacaaacgattcaaagtcttacaaagcccatccgaat |
51389846 |
T |
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| Q |
126 |
ttgaatgcttgtaaacttcgaatgcactgaaacgattcaagatcgaggacataaaagtgagatcaataactca |
198 |
Q |
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| T |
51389847 |
tcgaatgctagtaaatttccaatgcactgaaatgattcaagat-------ataaaagtgagatcaataactca |
51389912 |
T |
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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 770324 - 770262
Alignment:
| Q |
26 |
ttacatgaactaaccacacagcgcagcataacatacaccgatatccacaaacaaaaagtccct |
88 |
Q |
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| T |
770324 |
ttacatgaacaaaccacacagcgcagcataacatacaccgacatccacaaacaaaaagtccct |
770262 |
T |
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Target: scaffold0014 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 33218 - 33164
Alignment:
| Q |
190 |
aataactcatatatatgaacacatacaaaattagaagaacactacaatcagtgat |
244 |
Q |
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| T |
33218 |
aataactcatatatatgaacacatacaacattagaagaacactacaatcagtgat |
33164 |
T |
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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 4351614 - 4351512
Alignment:
| Q |
96 |
gattcaaagtcttacaaagccaatctgaatttgaatgcttgtaaacttcgaatgcactgaaacgattcaagatcgaggacataaaagtgagatcaataac |
195 |
Q |
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||||||| ||| |||| ||| ||| ||| ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||| ||| ||||||||| |
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| T |
4351614 |
gattcaagatctaacaatgcccatccgaaattgaatgcttgtaaacttccaatgcactgaaatgattcaagaaagaggacataaaaatgatatcaataac |
4351515 |
T |
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| Q |
196 |
tca |
198 |
Q |
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||| |
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| T |
4351514 |
tca |
4351512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 15405 - 15507
Alignment:
| Q |
96 |
gattcaaagtcttacaaagccaatctgaatttgaatgcttgtaaacttcgaatgcactgaaacgattcaagatcgaggacataaaagtgagatcaataac |
195 |
Q |
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||||||| ||| |||| ||| ||| ||| || |||||||||||||||| ||||||| |||| ||||||||| |||||||||||||||| ||||||||| |
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| T |
15405 |
gattcaagatctaacaatgcccatccgaaattaaatgcttgtaaacttccaatgcacagaaatgattcaagaaagaggacataaaagtgatatcaataac |
15504 |
T |
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| Q |
196 |
tca |
198 |
Q |
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||| |
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| T |
15505 |
tca |
15507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 48 - 200
Target Start/End: Complemental strand, 29199695 - 29199541
Alignment:
| Q |
48 |
gcagcataacatacaccgatatccacaaacaaaaag-tcccttacatatgattcaaagtcttacaaagccaatctgaatttgaatgctt-gtaaacttcg |
145 |
Q |
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||||||||||| ||||||| | |||| || |||||| ||||| ||| | |||| || ||| ||||||| ||| ||||||||||||| ||||||||| |
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| T |
29199695 |
gcagcataacacacaccgacagccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaacttcc |
29199596 |
T |
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| Q |
146 |
aatgcactgaaacgattcaagatcgaggacataaaagtgagatcaataactcata |
200 |
Q |
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||| |||||||| |||| |||| |||||||||||||||| |||||||||||||| |
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| T |
29199595 |
aatacactgaaatgatttaagaaagaggacataaaagtgatatcaataactcata |
29199541 |
T |
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