View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6353_high_1 (Length: 665)

Name: NF6353_high_1
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6353_high_1
NF6353_high_1
[»] chr7 (15 HSPs)
chr7 (28-648)||(321911-322531)
chr7 (457-623)||(23839292-23839457)
chr7 (461-623)||(28369273-28369435)
chr7 (463-623)||(3120743-3120903)
chr7 (457-560)||(1011469-1011572)
chr7 (457-560)||(1012331-1012434)
chr7 (457-614)||(22797523-22797679)
chr7 (457-623)||(38609281-38609454)
chr7 (457-622)||(7932285-7932447)
chr7 (457-623)||(39894794-39894958)
chr7 (485-623)||(5578953-5579095)
chr7 (462-546)||(29907248-29907332)
chr7 (592-648)||(1012265-1012321)
chr7 (590-623)||(7553534-7553567)
chr7 (577-619)||(29907213-29907255)
[»] chr8 (14 HSPs)
chr8 (28-458)||(18295240-18295688)
chr8 (459-648)||(8472643-8472832)
chr8 (463-638)||(32593499-32593674)
chr8 (457-623)||(33493808-33493975)
chr8 (457-623)||(7066129-7066295)
chr8 (459-623)||(8471891-8472055)
chr8 (457-623)||(18471185-18471351)
chr8 (457-623)||(32051613-32051779)
chr8 (457-623)||(8194357-8194521)
chr8 (529-623)||(32690288-32690382)
chr8 (460-645)||(541614-541797)
chr8 (540-623)||(33085282-33085365)
chr8 (515-560)||(539480-539525)
chr8 (494-588)||(20075653-20075749)
[»] chr4 (20 HSPs)
chr4 (459-648)||(37078965-37079153)
chr4 (457-623)||(39437173-39437338)
chr4 (457-623)||(37078261-37078426)
chr4 (457-623)||(41223928-41224093)
chr4 (457-623)||(49529487-49529650)
chr4 (457-621)||(50848133-50848298)
chr4 (457-623)||(44897906-44898072)
chr4 (457-648)||(47442031-47442222)
chr4 (29-252)||(47851002-47851239)
chr4 (461-623)||(28501848-28502004)
chr4 (457-623)||(22383977-22384138)
chr4 (457-573)||(6848625-6848741)
chr4 (456-623)||(32476606-32476767)
chr4 (548-623)||(16184705-16184780)
chr4 (574-623)||(13188076-13188125)
chr4 (538-623)||(50853897-50853982)
chr4 (467-648)||(34611844-34612021)
chr4 (567-623)||(6678556-6678612)
chr4 (579-623)||(34249628-34249672)
chr4 (295-371)||(47851236-47851312)
[»] chr1 (9 HSPs)
chr1 (457-623)||(25104730-25104895)
chr1 (457-623)||(32754924-32755090)
chr1 (457-623)||(45395795-45395960)
chr1 (457-623)||(14613883-14614048)
chr1 (457-619)||(37827844-37828006)
chr1 (457-560)||(1908252-1908355)
chr1 (501-619)||(46859619-46859737)
chr1 (271-363)||(26941923-26942015)
chr1 (574-623)||(19972601-19972650)
[»] chr5 (9 HSPs)
chr5 (457-648)||(4446357-4446548)
chr5 (460-620)||(7518858-7519018)
chr5 (457-579)||(4445511-4445632)
chr5 (457-623)||(43432098-43432264)
chr5 (481-623)||(27828359-27828501)
chr5 (461-602)||(27827527-27827672)
chr5 (540-623)||(23498381-23498464)
chr5 (514-583)||(27827436-27827505)
chr5 (501-533)||(9479572-9479604)
[»] chr2 (16 HSPs)
chr2 (460-624)||(24201231-24201394)
chr2 (457-623)||(23220958-23221124)
chr2 (472-623)||(2007099-2007250)
chr2 (459-622)||(33896751-33896914)
chr2 (461-623)||(17625741-17625903)
chr2 (457-623)||(17670128-17670294)
chr2 (457-624)||(14931883-14932050)
chr2 (496-623)||(25432744-25432870)
chr2 (457-574)||(37469253-37469370)
chr2 (501-622)||(13220099-13220220)
chr2 (472-600)||(35942071-35942199)
chr2 (457-623)||(11493767-11493942)
chr2 (551-619)||(3304549-3304617)
chr2 (572-623)||(38500599-38500650)
chr2 (267-314)||(25207812-25207859)
chr2 (457-518)||(3304647-3304707)
[»] chr3 (11 HSPs)
chr3 (457-623)||(20269871-20270037)
chr3 (457-623)||(48596784-48596952)
chr3 (267-455)||(1199457-1199645)
chr3 (515-619)||(26218770-26218874)
chr3 (460-554)||(28767440-28767534)
chr3 (495-610)||(55242339-55242454)
chr3 (496-610)||(44399596-44399709)
chr3 (460-634)||(109556-109729)
chr3 (466-580)||(40268360-40268474)
chr3 (540-621)||(28767629-28767710)
chr3 (494-623)||(46143445-46143575)
[»] chr6 (4 HSPs)
chr6 (457-621)||(15869362-15869526)
chr6 (271-455)||(32687273-32687457)
chr6 (267-455)||(19810982-19811170)
chr6 (295-363)||(14767476-14767544)


Alignment Details
Target: chr7 (Bit Score: 609; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 28 - 648
Target Start/End: Complemental strand, 322531 - 321911
Alignment:
Q  28 gaattaatggaatggcagtaaataggagaatagcagtacttaggggatttatatggagtagtagtagtaatattgattgaaatcagcaataaaagtatga 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  322531 gaattaatggaatggcagtaaataggagaatagcagtacttaggggatttatatggaatagtagtagtaatattgattgaaatcagcaataaaagtatga 322432  T
Q  128 aagctttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggtttatattcaacatcttaaaacataaaatt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322431 aagctttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggtttatattcaacatcttaaaacataaaatt 322332  T
Q  228 caaaacaatctacagacatcactcatgctgtgaactataatattgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcc 327  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322331 caaaacaatatacagacatcactcatgctgtgaactataatattgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcc 322232  T
Q  328 tgagctacaatctgttccatagccatgtataaaggattgtctgcatacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatga 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322231 tgagctacaatctgttccatagccatgtataaaggattgtctgcatacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatga 322132  T
Q  428 cagacaatgactcaacaccatgttcctcctctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaa 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  322131 cagacaatgactcaacaccatgttcctcctctataatgagatcacacaccttgtatttataatgcctttacaataaatacattgaatgcttatttagtaa 322032  T
Q  528 gcactaacccaggaagttgaatactctaggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaacatccc 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322031 gcactaacccaggaagttgaatactctaggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaacatccc 321932  T
Q  628 tcctcaagctgaagcatacat 648  Q
    |||||||||||||||||||||    
T  321931 tcctcaagctgaagcatacat 321911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 457 - 623
Target Start/End: Complemental strand, 23839457 - 23839292
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||||| |||||||||||||||  |||||| ||| | ||||||||||||| ||||||||||||| || |||||||| ||||||||||    
T  23839457 tctataatgagatcacacaacttgtatttataatggttttacaataagtgcattgaatgcttaattagtaagcactagcctaggaagttaaatactctag 23839358  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||| || | |||||||||||||||||||||| | |||||||||||||||||||||||| |||||||    
T  23839357 gagttat-acaatcaatctaggaagttgtataatcaaaggaatatctaaagattcttaactttaaca 23839292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 461 - 623
Target Start/End: Complemental strand, 28369435 - 28369273
Alignment:
Q  461 taatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggagt 560  Q
    ||||||||||||| |||||||||||||||||  |||||| |||||||||||| ||||||  |||||||||||| ||  |||||||| |||||||||||||    
T  28369435 taatgagatcacagaccttgtatttataatggttttacaataaatacattgagtgcttaactagtaagcactagcctcggaagttgtatactctaggagt 28369336  T
Q  561 gataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
     ||   |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  28369335 aatggcaatcaatctaggaagttgtacaattaaaggaatatctaaagattcttaattttaaca 28369273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 463 - 623
Target Start/End: Original strand, 3120743 - 3120903
Alignment:
Q  463 atgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactct-aggagtg 561  Q
    |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    ||||||||||| ||||| | ||||     
T  3120743 atgatatcacacaccttgtatttataatgc-tttacaataaatacattgaatgcttatttagtaagcactagattaggaagttgaacactcttaagagta 3120841  T
Q  562 ataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    || | |||||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||    
T  3120842 atgacaatcaatctaggaagttgtacaattaaaggaatatctaaatattcttacttttaaca 3120903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 457 - 560
Target Start/End: Complemental strand, 1011572 - 1011469
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  1011572 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatactctag 1011473  T
Q  557 gagt 560  Q
    ||||    
T  1011472 gagt 1011469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 457 - 560
Target Start/End: Complemental strand, 1012434 - 1012331
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  1012434 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatactctag 1012335  T
Q  557 gagt 560  Q
    ||||    
T  1012334 gagt 1012331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 457 - 614
Target Start/End: Complemental strand, 22797679 - 22797523
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||| | ||||| ||||| |  ||||||||| |||||||||    
T  22797679 tctataatgagatcacacaccttgtatttataatggttttacaataaatacattgaatgcttaatgagtaaacactagcttaggaagttgtatactctag 22797580  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattctta 614  Q
    | || |||| |||||||||||| |||||||   ||||| |||||||||||||||||||    
T  22797579 gggtaataacaatcaatctagggagttgtaccattaaa-gaatatctaaagattctta 22797523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 457 - 623
Target Start/End: Complemental strand, 38609454 - 38609281
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaataca------ttgaatgcttatttagtaagcactaacccaggaagttgaata 550  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||| | |      | ||||||||| | |||| |||||| || ||||||||| |||    
T  38609454 tctataatgagatcacacaccttgtatttataatggttttacaataaaaataaatgtatcgaatgcttaatgagtacgcactagcctaggaagttgtata 38609355  T
Q  551 ctctaggagtgataataatcaatctaggaagttgtatagttaaa-ggaatatctaaagattcttaattttaaca 623  Q
    |||||||||| |||| ||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||    
T  38609354 ctctaggagtaataacaatcaatttaggaagttgtacaattaaagggaatatctaaagattcttaattttaaca 38609281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 457 - 622
Target Start/End: Complemental strand, 7932447 - 7932285
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    |||||||||||||||||||| ||||||||||||||  |||||| |||||  |||||||||||| | ||||||||||| || ||||||||| |||  ||||    
T  7932447 tctataatgagatcacacacattgtatttataatgattttacaataaattaattgaatgcttaatgagtaagcactagcctaggaagttgtata--ctag 7932350  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaac 622  Q
    ||||  | | |||||||||||||||||||| | ||||||||||||||  || ||||||||||||||    
T  7932349 gagtagtgacaatcaatctaggaagttgtacaattaaaggaatatctgtag-ttcttaattttaac 7932285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 457 - 623
Target Start/End: Complemental strand, 39894958 - 39894794
Alignment:
Q  457 tctataatgagatcacacac--cttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactct 554  Q
    ||||||||||||||||||||  ||||||||||||| |  |||||| ||||| ||||||||||||| | |||| |||||| || ||||||||| |||||||    
T  39894958 tctataatgagatcacacacaccttgtatttataacgattttacaataaatgcattgaatgcttaatgagtaggcactagcctaggaagttgtatactct 39894859  T
Q  555 aggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    ||     |||| |||||||  |||||||| || | |||||||||||||| |||||||||||||||||||    
T  39894858 ag----aataacaatcaatgcaggaagttatacaattaaaggaatatctgaagattcttaattttaaca 39894794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 485 - 623
Target Start/End: Complemental strand, 5579095 - 5578953
Alignment:
Q  485 tataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggagtgataataatcaatctaggaagt-- 582  Q
    |||||||  |||||| |||| |||||||||||||| | || |||||||| || ||||||||| ||||||||| ||| |||| ||||||||||||||||      
T  5579095 tataatggttttacaataaacacattgaatgcttaatgagcaagcactagcctaggaagttgtatactctagaagtaataacaatcaatctaggaagtca 5578996  T
Q  583 --tgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
       ||  | ||||||||||||||||||||||||||||||||||    
T  5578995 tcagttcaattaaaggaatatctaaagattcttaattttaaca 5578953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 462 - 546
Target Start/End: Complemental strand, 29907332 - 29907248
Alignment:
Q  462 aatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    ||||||||||||||||||||||||||||||  |||||| ||||| ||||||||||||| | ||||||||||| ||  ||||||||    
T  29907332 aatgagatcacacaccttgtatttataatggttttacactaaatgcattgaatgcttagtaagtaagcactagccttggaagttg 29907248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 592 - 648
Target Start/End: Complemental strand, 1012321 - 1012265
Alignment:
Q  592 aaaggaatatctaaagattcttaattttaacatccctcctcaagctgaagcatacat 648  Q
    ||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||||    
T  1012321 aaagggatatctaaagattcttaactttaacacccctcctcaagctggagcatacat 1012265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 623
Target Start/End: Complemental strand, 7553567 - 7553534
Alignment:
Q  590 ttaaaggaatatctaaagattcttaattttaaca 623  Q
    ||||||||||||||||||||||||||||||||||    
T  7553567 ttaaaggaatatctaaagattcttaattttaaca 7553534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 577 - 619
Target Start/End: Complemental strand, 29907255 - 29907213
Alignment:
Q  577 ggaagttgtatagttaaaggaatatctaaagattcttaatttt 619  Q
    |||||||||| | ||||||||||||||||||||| ||||||||    
T  29907255 ggaagttgtacaattaaaggaatatctaaagatttttaatttt 29907213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 28 - 458
Target Start/End: Original strand, 18295240 - 18295688
Alignment:
Q  28 gaattaatggaatggcagtaaataggagaatagcagtacttaggggatttatatgga---gtagtagtagtaatattgattgaaatcagcaataaaagta 124  Q
    |||||||| ||||||||||||||||||||||||||| |||   || |||||||||||   ||||||||||||||||||||| |||||||||| |||||||    
T  18295240 gaattaattgaatggcagtaaataggagaatagcagcactc--ggaatttatatggaatagtagtagtagtaatattgatttaaatcagcaacaaaagta 18295337  T
Q  125 tgaaagct--------------------ttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggtttatat 204  Q
    ||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18295338 tgaaagctgagaattgaaattacaaaatttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggttcatat 18295437  T
Q  205 tcaacatcttaaaacataaaattcaaaacaatctacagacatcactcatgctgtgaactataatattgcctgacatttctccgcttacgcctcaatgact 304  Q
     |||| |||| |||||||||| |||||||||| ||||||||||||||| |||||||||||||   ||||||||| |||||||||||||||||||||||||    
T  18295438 ccaacttcttcaaacataaaactcaaaacaatatacagacatcactcaggctgtgaactata---ttgcctgacctttctccgcttacgcctcaatgact 18295534  T
Q  305 ggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaaggattgtctgcatacttgggattctgttcaattgaattaatttc 404  Q
     ||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||   ||||||||||||| ||||||||| |    
T  18295535 tgtactgagtcgcaggcgtggcctgagctacaatctgtttcatagccatgtataaaggagtgtctgcgtactcctgattctgttcaatggaattaattgc 18295634  T
Q  405 caaggcactgatcctgcagatgacagacaatgactcaacaccatgttcctcctc 458  Q
    || ||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  18295635 cagggccctgatcctgcagatgacagacaatggctcaacaccatgttcctcctc 18295688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 459 - 648
Target Start/End: Complemental strand, 8472832 - 8472643
Alignment:
Q  459 tataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctagga 558  Q
    |||||||||||||||||||||||||||||||||  |||||| ||  | ||||||||||||| ||||||||||||| || | ||||||||||||||| |||    
T  8472832 tataatgagatcacacaccttgtatttataatggttttacaataggtgcattgaatgcttaattagtaagcactagcctaagaagttgaatactcttgga 8472733  T
Q  559 gtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaacatccctcctcaagctgaagcatacat 648  Q
    || |||| || ||||||||||||||||| | ||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||||    
T  8472732 gtaataacaaccaatctaggaagttgtacaattaaagggatatctaaagattcttaactttaacacccctcctcaagctggagcatacat 8472643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 463 - 638
Target Start/End: Complemental strand, 32593674 - 32593499
Alignment:
Q  463 atgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggagtga 562  Q
    |||||||||||||||||||||||||||||  |||| | ||||||||||||||||||| ||||||||||||| || ||||||||| |||||||||||||      
T  32593674 atgagatcacacaccttgtatttataatggttttataataaatacattgaatgcttaattagtaagcactagcctaggaagttgtatactctaggagtag 32593575  T
Q  563 taataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaacatccctcctcaagctg 638  Q
     || |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| | ||||||||||||    
T  32593574 gaacaatcaatctaggaagttgtacaattaaaggaatatctatagattcttaattttaacacctctcctcaagctg 32593499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 457 - 623
Target Start/End: Original strand, 33493808 - 33493975
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||||| |||||||||||||||  |||||| ||||||||||||||||| ||||||||||||||| || || ||||||||||||||||    
T  33493808 tctataatgagatcacacatcttgtatttataatgattttacaataaatacattgaatgct-atttagtaagcactagcctagaaagttgaatactctag 33493906  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaagga--atatctaaagattcttaattttaaca 623  Q
    |||| |||| | |||||||||||||||||| | ||||||||  ||||||||||||||||||||||||||    
T  33493907 gagtaataacactcaatctaggaagttgtagaattaaaggaatatatctaaagattcttaattttaaca 33493975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 457 - 623
Target Start/End: Original strand, 7066129 - 7066295
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    |||||||||||||||||||||||||| ||||||||  |||||| | | | |||||||| |||  ||||||||||||| || |||||||||||||||||||    
T  7066129 tctataatgagatcacacaccttgtaattataatgattttacaattagtgcattgaatacttcattagtaagcactagcctaggaagttgaatactctag 7066228  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||| | || |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  7066229 gagtaacaacaatcaatctaggaagttgtataattaaaggaatatctaaagattcttaactttaaca 7066295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 459 - 623
Target Start/End: Complemental strand, 8472055 - 8471891
Alignment:
Q  459 tataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctagga 558  Q
    |||||||| ||||||||||||||||||||||||  |||| | ||| | ||||||||||||| ||||||||||||| || ||| |||||||||||||| ||    
T  8472055 tataatgaaatcacacaccttgtatttataatggttttagaataagtgcattgaatgcttaattagtaagcactagcctagggagttgaatactctacga 8471956  T
Q  559 gtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    || |||| |||||||||||||||||||| | ||||||| |||||||||||||||||| |||||||    
T  8471955 gtaataacaatcaatctaggaagttgtacaattaaagggatatctaaagattcttaactttaaca 8471891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 457 - 623
Target Start/End: Original strand, 18471185 - 18471351
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    |||||||||||||||||||||||||||||||||||  |||||  ||||| ||||||||||||| | ||||||||||| || ||||||||| ||||| |||    
T  18471185 tctataatgagatcacacaccttgtatttataatggttttacgataaatgcattgaatgcttaatgagtaagcactaccctaggaagttgtatactttag 18471284  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
     ||| |||| |||||||||||||||||||| | ||||||||| || |||||||| |||| |||||||    
T  18471285 aagtaataacaatcaatctaggaagttgtacaattaaaggaacatgtaaagattgttaactttaaca 18471351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 457 - 623
Target Start/End: Original strand, 32051613 - 32051779
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    |||||||||| |||| |||||||||||||||||||  |||||| ||||||||||||| ||||| ||||||||||||| || ||||||||| ||| ||||     
T  32051613 tctataatgatatcatacaccttgtatttataatggttttacaataaatacattgaacgcttaattagtaagcactagcctaggaagttgtatagtctaa 32051712  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||| |||| |||||||||||  |||||||||   |||||||||||| |||||||||||||||||||    
T  32051713 gagtaataaaaatcaatctagagagttgtataaccaaaggaatatctgaagattcttaattttaaca 32051779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 457 - 623
Target Start/End: Complemental strand, 8194521 - 8194357
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||||   ||||||||||||||   ||||| ||| | ||||||||||||| ||||||||||||| || ||||||| |||||||| ||    
T  8194521 tctataatgagatcacacta-ttgtatttataatggtgttacaataagtgcattgaatgcttaattagtaagcactagcctaggaagt-gaatactcaag 8194424  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||| |||| |||||||||||||||| ||| | ||||| ||||| ||||||| |||||| |||||||    
T  8194423 gagtaataacaatcaatctaggaagtggtacaattaaaagaatacctaaagactcttaactttaaca 8194357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 529 - 623
Target Start/End: Original strand, 32690288 - 32690382
Alignment:
Q  529 cactaacccaggaagttgaatactctaggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    ||||| || ||||||||| ||||||||||||| |||| |||||| |||||||||| || | |||||||||| |||||||||||||||||||||||    
T  32690288 cactagcctaggaagttgtatactctaggagtaataacaatcaacctaggaagttatacaattaaaggaatgtctaaagattcttaattttaaca 32690382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 460 - 645
Target Start/End: Original strand, 541614 - 541797
Alignment:
Q  460 ataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggag 559  Q
    |||||||||||||||| ||| ||||||||||   |||||| ||||| |||| |||||||| ||||||||||  |  | ||||||||| |||||  |  ||    
T  541614 ataatgagatcacacaacttctatttataattgttttacaataaatgcattcaatgcttaattagtaagcaagagactaggaagttgtatacttcaaaag 541713  T
Q  560 tgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaacatccctcctcaagctgaagcata 645  Q
    | | || ||||||| ||||||  | || | ||||||||||||||||   ||||||||||||||| |||||||||||||| ||||||    
T  541714 taagaacaatcaatataggaatctatacaattaaaggaatatctaa--gttcttaattttaacacccctcctcaagctggagcata 541797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 540 - 623
Target Start/End: Complemental strand, 33085365 - 33085282
Alignment:
Q  540 gaagttgaatactctaggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    ||||||| |||| |||||||| |||  |||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||||    
T  33085365 gaagttgtataccctaggagtaatagcaatcaatctaggaagtagtacaattaaaggaaaatctaaagattcttaattttaaca 33085282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 515 - 560
Target Start/End: Original strand, 539480 - 539525
Alignment:
Q  515 gcttatttagtaagcactaacccaggaagttgaatactctaggagt 560  Q
    ||||||||||||||||||| || |||||||||||||||||||||||    
T  539480 gcttatttagtaagcactagcctaggaagttgaatactctaggagt 539525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 494 - 588
Target Start/End: Original strand, 20075653 - 20075749
Alignment:
Q  494 tttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactcta--ggagtgataataatcaatctaggaagttgtata 588  Q
    |||||| ||||| ||||| ||||||| | |||||||| || || ||||||||| ||||| ||  ||| | |||| ||||||||||||||||||||||    
T  20075653 tttacaataaatgcattggatgcttaatgagtaagcagtagcctaggaagttgtatactatataggattaataagaatcaatctaggaagttgtata 20075749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 5e-67; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 459 - 648
Target Start/End: Complemental strand, 37079153 - 37078965
Alignment:
Q  459 tataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctagga 558  Q
    ||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| || || |||||||||||||||||||||    
T  37079153 tataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcagtagcctaggaagttgaatactctagga 37079054  T
Q  559 gtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaacatccctcctcaagctgaagcatacat 648  Q
    || || | |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||||    
T  37079053 gttat-acaatcaatctaggaagttgtacagttaaagggatatctaaagattcttaactttaacacccctcctcaagctgtagcatacat 37078965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 457 - 623
Target Start/End: Complemental strand, 39437338 - 39437173
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  39437338 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatactctag 39437239  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||| |||| |||||||||||||||||||| | ||||||| |||||||||||||||||| |||||||    
T  39437238 gagttataa-aatcaatctaggaagttgtacaattaaagggatatctaaagattcttaactttaaca 39437173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 457 - 623
Target Start/End: Complemental strand, 37078426 - 37078261
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| || || || || ||||||||||||||||    
T  37078426 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaaacagtagcctagaaagttgaatactctag 37078327  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||| || | |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||    
T  37078326 gagttat-acaatcaatctaggaagttgtacagttaaagggatatctaaagattcttaactttaaca 37078261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 457 - 623
Target Start/End: Complemental strand, 41224093 - 41223928
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    |||||||||||||||||| |||||||||||| |||  |||||| ||||||||||||||||||||||||| ||||||| || ||||||||| ||||||| |    
T  41224093 tctataatgagatcacac-ccttgtatttatgatggttttacaataaatacattgaatgcttatttagtgagcactagcctaggaagttgtatactcttg 41223995  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||    
T  41223994 gagtaataacaatcaatctaggaagttgtacagttaaaggcatatctaaagattcttaactttaaca 41223928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 457 - 623
Target Start/End: Complemental strand, 49529650 - 49529487
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||| | ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  49529650 tctataatgagatcacaaagcttgtatttataatggctttaccataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatactctag 49529551  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||| || | |||||||||||||||||||| | |||||||   |||||||||||||||| |||||||    
T  49529550 gagttat-acaatcaatctaggaagttgtacaattaaagg--gatctaaagattcttaactttaaca 49529487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 457 - 621
Target Start/End: Original strand, 50848133 - 50848298
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactc-ta 555  Q
    |||||||||||||||| |||||||||| ||||||| |||||||  |||||||||||||||||| ||||||||||||| || |||||||||||||||| |     
T  50848133 tctataatgagatcactcaccttgtatctataatggctttacaaaaaatacattgaatgcttaattagtaagcactagcctaggaagttgaatactcttg 50848232  T
Q  556 ggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaa 621  Q
    ||||| ||   |||||||||||||||| | ||| ||||| |||||||||||||||||||| |||||    
T  50848233 ggagtaatcgcaatcaatctaggaagtagaataattaaacgaatatctaaagattcttaactttaa 50848298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 457 - 623
Target Start/End: Original strand, 44897906 - 44898072
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||| | ||||||||||||| | |||||| |||| || ||||||  | ||||||| |    
T  44897906 tctataatgagatcacacaccttgtatttataatggttttacaataagtgcattgaatgcttaatgagtaagaactagcctaggaaggagtatactcttg 44898005  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||| |||| ||||||||| |||||||||| | |||||||||||| |||||||||||||||| ||||    
T  44898006 gagtaataacaatcaatctgggaagttgtacaattaaaggaatatgtaaagattcttaatttcaaca 44898072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 457 - 648
Target Start/End: Original strand, 47442031 - 47442222
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||| |||||||||| | ||||||||| ||||  |||||| ||||| ||||||||||||| |||||||||||||  | || |||||| |||||||||    
T  47442031 tctataacgagatcacactctttgtatttacaatggttttacaataaatgcattgaatgcttaattagtaagcactagactagcaagttgtatactctag 47442130  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaacatccctcctcaagctgaagcatacat 648  Q
    |||| ||||  ||||| |||||||||| || | | ||||||||  |||||||||||||||||||||| | |||||||||||| | |||||||    
T  47442131 gagtaataactatcaaactaggaagttatagaatgaaaggaattcctaaagattcttaattttaacagcgctcctcaagctggatcatacat 47442222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 47851002 - 47851239
Alignment:
Q  29 aattaatggaatggcagtaaataggagaatagcagtacttaggggatttatatggagtagtagtagtaatattgattgaaatcagcaataaaagtatgaa 128  Q
    ||||||||||||||||| ||||||||||||||||||||  | || || |||||||| |||||| ||||||||||||||||||| | || |||||||||||    
T  47851002 aattaatggaatggcagcaaataggagaatagcagtacccaaggaatatatatggaatagtagcagtaatattgattgaaatctggaacaaaagtatgaa 47851101  T
Q  129 agct--------------------ttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggtttatattcaa 208  Q
    ||||                    |||||||||||||||||||||||||    |||||||||||||||||||||||||||| ||||||||| |||| |||    
T  47851102 agctgagaattgaaattacaaaatttcataaatccattcaaatgtcata----ccaagtacataggttcataaggaccaaccacataggttcatatccaa 47851197  T
Q  209 catcttaaaacataaaattcaaaacaatctacagacatcactca 252  Q
      ||||||||||||||| ||  |||||| |||||||||||||||    
T  47851198 attcttaaaacataaaactc--aacaatatacagacatcactca 47851239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 461 - 623
Target Start/End: Original strand, 28501848 - 28502004
Alignment:
Q  461 taatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggagt 560  Q
    ||||||||||||||||||||||| |||||||  |||||| ||||| |||| |||||| | ||| |   ||||| || |||||||||||||   |||||||    
T  28501848 taatgagatcacacaccttgtatatataatggttttacaataaatgcattaaatgctaaattaat---cactagcctaggaagttgaata---taggagt 28501941  T
Q  561 gataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
     || | |||||||||||||||||||| | |||||||||||||||||||||||||| |||||||    
T  28501942 aattacaatcaatctaggaagttgtacaattaaaggaatatctaaagattcttaactttaaca 28502004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 457 - 623
Target Start/End: Complemental strand, 22384138 - 22383977
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||| |||||| ||||||||||||||||||||||  | || | ||||||||||||||||||| ||| ||||||| | |  ||||| ||| ||||| |||    
T  22384138 tctatgatgagaccacacaccttgtatttataatggttgtagaataaatacattgaatgcttaattaataagcacaagcttaggaaattgtatactatag 22384039  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    || | |||| |||||||||| |||||||||      |||||||||||||||||||||||||||||||    
T  22384038 gaataataacaatcaatctaagaagttgta-----caaggaatatctaaagattcttaattttaaca 22383977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 457 - 573
Target Start/End: Original strand, 6848625 - 6848741
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||||||||||||||  |||||  |||||| ||||| || |||||||||| | ||||||||||| || ||||||||| |||||||||    
T  6848625 tctataatgagatcacacaccttgtattattaatggttttacaataaatgcaatgaatgcttaatgagtaagcactagcctaggaagttgtatactctag 6848724  T
Q  557 gagtgataataatcaat 573  Q
    |||| |||| |||||||    
T  6848725 gagtaataacaatcaat 6848741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 456 - 623
Target Start/End: Original strand, 32476606 - 32476767
Alignment:
Q  456 ctctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactcta 555  Q
    ||||||||||||||||||| |||| |||||||| ||  |||||| ||||| |||||||||| |||||||| ||||||| ||  || ||||  ||||  ||    
T  32476606 ctctataatgagatcacac-ccttctatttatagtgggtttacaataaatgcattgaatgcatatttagtgagcactagccttgggagttttatacaata 32476704  T
Q  556 ggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    ||||     | || |||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  32476705 ggag-----acaaccaatctaggaagttataaagttaaaggaatatctaaagattcttaattttaaca 32476767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 548 - 623
Target Start/End: Complemental strand, 16184780 - 16184705
Alignment:
Q  548 atactctaggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    ||||||||||| | |||| ||||| || ||||||||||| | ||||| ||||||||||||||||||| ||||||||    
T  16184780 atactctaggaataataacaatcagtcgaggaagttgtacaattaaaagaatatctaaagattcttacttttaaca 16184705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 574 - 623
Target Start/End: Complemental strand, 13188125 - 13188076
Alignment:
Q  574 ctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    ||||||||||||| | |||||||||||||||||||| |||||||||||||    
T  13188125 ctaggaagttgtacaattaaaggaatatctaaagatacttaattttaaca 13188076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 623
Target Start/End: Complemental strand, 50853982 - 50853897
Alignment:
Q  538 aggaagttgaatactctaggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    ||||||||| ||| | | ||||| |||| ||||||||||| | |||||| | |||||||||||||| |||| ||||||||||||||    
T  50853982 aggaagttgtatattgtgggagtaataacaatcaatctagaatgttgtacaattaaaggaatatcttaagaatcttaattttaaca 50853897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 648
Target Start/End: Complemental strand, 34612021 - 34611844
Alignment:
Q  467 gatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggagtgataat 566  Q
    ||||||||| ||||||||||||||    ||||| |||||||| |||||||||| |   |||||||||||| |||| |||| |||||||  || |  |||     
T  34612021 gatcacacagcttgtatttataatagtgttacaataaatacactgaatgcttaatggataagcactaacctaggatgttgtatactctgtgaatattaac 34611922  T
Q  567 aatcaatctaggaagttgtatagttaaaggaatatctaaagatt--cttaattttaacatccctcctcaagctgaagcatacat 648  Q
    ||||||   ||||||||||| | ||||||||||| ||| |||||  ||||||| |||||   || ||||||||| |||||||||    
T  34611921 aatcaa---aggaagttgtacatttaaaggaataactacagattcacttaattctaaca---ctactcaagctggagcatacat 34611844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 623
Target Start/End: Complemental strand, 6678612 - 6678556
Alignment:
Q  567 aatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    ||||||||||| ||||| || | |||||| |||||  ||||||||||||||||||||    
T  6678612 aatcaatctagaaagttatacaattaaagaaatattgaaagattcttaattttaaca 6678556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 623
Target Start/End: Original strand, 34249628 - 34249672
Alignment:
Q  579 aagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||||||| | ||| |||||||||||| |||||||||||||||||    
T  34249628 aagttgtacaattataggaatatctaaggattcttaattttaaca 34249672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 371
Target Start/End: Original strand, 47851236 - 47851312
Alignment:
Q  295 ctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaaggattgtctgc 371  Q
    |||| ||||||||||||| | |||| | |||| |  ||||||||| ||| |||||||||||||||  ||||||||||    
T  47851236 ctcagtgactggtactgaatcgcaggcgtggcataggctacaatcagtttcatagccatgtataagtgattgtctgc 47851312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 2e-60; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 457 - 623
Target Start/End: Original strand, 25104730 - 25104895
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  25104730 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatactctag 25104829  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||| || |||||||||||||||||||||| | ||||||| |||||||||||||||||| |||||||    
T  25104830 gagttat-ataatcaatctaggaagttgtacaattaaagggatatctaaagattcttaactttaaca 25104895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 457 - 623
Target Start/End: Original strand, 32754924 - 32755090
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||||| |||||||||||||||||||||||||| || ||||||||| |||||||||    
T  32754924 tctataatgagatcacacaccttgtatttataatggttttacaataaataaattgaatgcttatttagtaagcactacccaaggaagttgtatactctag 32755023  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||| |||| ||||||||||||||||| || | ||| |||||||||| |||||||||||||||||||    
T  32755024 gagtaataacaatcaatctaggaagttttacaattagaggaatatctgaagattcttaattttaaca 32755090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 457 - 623
Target Start/End: Complemental strand, 45395960 - 45395795
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  45395960 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatactctag 45395861  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||| || | |||||||||||||||| ||| | ||||||| |||||||||||||||||| |||||||    
T  45395860 gagttat-acaatcaatctaggaagtcgtacaattaaagggatatctaaagattcttaactttaaca 45395795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 457 - 623
Target Start/End: Complemental strand, 14614048 - 14613883
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| |||||||| | ||| |||||||||||||||| | || || ||||||||||||||||    
T  14614048 tctataatgagatcacacagcttgtatttataatggctttacaataaatacactaaatacttatttagtaagcaccagcctagaaagttgaatactctag 14613949  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||| || | ||||||||||  |||||||| | ||||||| |||||||||||||||||| |||||||    
T  14613948 gagttat-acaatcaatctaaaaagttgtacaattaaagggatatctaaagattcttaactttaaca 14613883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 457 - 619
Target Start/End: Complemental strand, 37828006 - 37827844
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||||  |||| |||||||| | ||||||||||| || ||||||||| ||| | |||    
T  37828006 tctataatgagatcacacaccttgtatttataatggttttacaataaaagcattcaatgcttaataagtaagcactagcctaggaagttgtatattgtag 37827907  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaatttt 619  Q
    |||| |||| |||| ||||||||||||||| | ||||| ||||||||||||||||||||||||    
T  37827906 gagtaataacaatcgatctaggaagttgtacaattaaatgaatatctaaagattcttaatttt 37827844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 457 - 560
Target Start/End: Complemental strand, 1908355 - 1908252
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  1908355 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatactctag 1908256  T
Q  557 gagt 560  Q
    ||||    
T  1908255 gagt 1908252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 501 - 619
Target Start/End: Original strand, 46859619 - 46859737
Alignment:
Q  501 taaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggagtgataataatcaatctaggaagttgtatagttaaaggaata 600  Q
    |||||||||||||| |||| ||||| |||||||  | || |||||| ||||||||||||| | || |||||||||||||||||||| | |||||||||||    
T  46859619 taaatacattgaatccttaattagtgagcactaggctagaaagttgtatactctaggagtaacaacaatcaatctaggaagttgtacaattaaaggaata 46859718  T
Q  601 tctaaagattcttaatttt 619  Q
    |||||||||||||||||||    
T  46859719 tctaaagattcttaatttt 46859737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 271 - 363
Target Start/End: Complemental strand, 26942015 - 26941923
Alignment:
Q  271 tgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaagga 363  Q
    |||||||||||||||||||||||| |||| |||||||||||||| | || | |||| ||||||| |||| | |||||||| ||||||||||||    
T  26942015 tgcctgacatttctccgcttacgcatcaacgactggtactgagtggtaggcgtggcatgagctataatccgctccatagcaatgtataaagga 26941923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 623
Target Start/End: Original strand, 19972601 - 19972650
Alignment:
Q  574 ctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    ||||||||||||| | |||||||||| ||| |||||||||||||||||||    
T  19972601 ctaggaagttgtacaattaaaggaatttctgaagattcttaattttaaca 19972650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 457 - 648
Target Start/End: Complemental strand, 4446548 - 4446357
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatg-cttatttagtaagcactaacccaggaagttgaatactcta 555  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| || ||||||||||||||||||    
T  4446548 tctataatgagatcacacagcttctatttataatggctttacaataaatacattgaatggcttatttagtaagcactagcctaggaagttgaatactcta 4446449  T
Q  556 ggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaacatccctcctcaagctgaagcatacat 648  Q
    ||||| |||  |||||||||||||||||||| | ||||||| ||||||||| |||||||| ||||||| |||||||||||||| |||||||||    
T  4446448 ggagttatac-aatcaatctaggaagttgtacaattaaagggatatctaaatattcttaactttaacacccctcctcaagctggagcatacat 4446357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 460 - 620
Target Start/End: Complemental strand, 7519018 - 7518858
Alignment:
Q  460 ataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggag 559  Q
    ||||||||||  |||||||||||||||||| |  |||||| ||||  ||||||| ||||| | ||||||||||| || ||||||||| ||||||||||||    
T  7519018 ataatgagattgcacaccttgtatttataacggttttacaataaaagcattgaaagcttaataagtaagcactagcctaggaagttgtatactctaggag 7518919  T
Q  560 tgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaatttta 620  Q
    | |||| | |||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  7518918 taataacagtcaatctaggaagttgtacagttaaaggaatatctaaagatgcttaatttta 7518858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 457 - 579
Target Start/End: Complemental strand, 4445632 - 4445511
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||||||    
T  4445632 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattaaatgcttatttagtaagcactagcctaggaagttgaatactctag 4445533  T
Q  557 gagtgataataatcaatctagga 579  Q
    |||| || | |||||||||||||    
T  4445532 gagttat-acaatcaatctagga 4445511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 457 - 623
Target Start/End: Original strand, 43432098 - 43432264
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    |||||||||||||||||||||||||||  ||||    |||||| ||||| ||||||||||||| | ||||||||||| || ||||||||| ||||| |||    
T  43432098 tctataatgagatcacacaccttgtatgcataactgttttacaataaattcattgaatgcttaatcagtaagcactagcctaggaagttgcatactttag 43432197  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    || | |||| |||||||||| ||||||||| | |||||||||||| | |||||||||||||||||||    
T  43432198 gaataataacaatcaatctacgaagttgtacaattaaaggaatatatgaagattcttaattttaaca 43432264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 481 - 623
Target Start/End: Original strand, 27828359 - 27828501
Alignment:
Q  481 tatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggagtgataataatcaatctaggaa 580  Q
    |||||||||||  |||||| ||||| ||||||||||||| | || |||||||| || ||||||||| ||| ||||||||| |||| ||||||||||||||    
T  27828359 tatttataatggttttacaataaatgcattgaatgcttaataagaaagcactagcctaggaagttgtatattctaggagtaataacaatcaatctaggaa 27828458  T
Q  581 gttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||||| | |||| ||||||||||||||||| |||||||||||    
T  27828459 gttgtacaattaagggaatatctaaagattcataattttaaca 27828501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 461 - 602
Target Start/End: Original strand, 27827527 - 27827672
Alignment:
Q  461 taatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttattta----gtaagcactaacccaggaagttgaatactctag 556  Q
    |||||||||||||||||||||||||||||||  |||||| |||| | |||||||||||  |||    |||||||||| || ||||||||| |||||||||    
T  27827527 taatgagatcacacaccttgtatttataatggttttacaataaacaaattgaatgcttgcttaataagtaagcactagcctaggaagttgtatactctag 27827626  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatc 602  Q
    |||| |||| || ||||||||||||||||| | |||| ||||||||    
T  27827627 gagttataacaaccaatctaggaagttgtacaattaagggaatatc 27827672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 540 - 623
Target Start/End: Original strand, 23498381 - 23498464
Alignment:
Q  540 gaagttgaatactctaggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    ||||||| |||| | |||||| |||  |||||||||||||||| ||| | ||||||||| ||||||||||||||||||| ||||    
T  23498381 gaagttgtataccccaggagtaatagcaatcaatctaggaagtagtacaattaaaggaaaatctaaagattcttaatttcaaca 23498464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 583
Target Start/End: Original strand, 27827436 - 27827505
Alignment:
Q  514 tgcttatttagtaagcactaacccaggaagttgaatactctaggagtgataataatcaatctaggaagtt 583  Q
    |||||| | ||||||||||| || ||||||||| |||||||||| || | || |||||||||||||||||    
T  27827436 tgcttaataagtaagcactagcctaggaagttgtatactctaggtgtaagaacaatcaatctaggaagtt 27827505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 533
Target Start/End: Original strand, 9479572 - 9479604
Alignment:
Q  501 taaatacattgaatgcttatttagtaagcacta 533  Q
    ||||||||||||||||||||||||||| |||||    
T  9479572 taaatacattgaatgcttatttagtaaacacta 9479604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 7e-57; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 460 - 624
Target Start/End: Complemental strand, 24201394 - 24201231
Alignment:
Q  460 ataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggag 559  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  24201394 ataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatactctaggag 24201295  T
Q  560 tgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaacat 624  Q
    | || | |||||||||||||||||||| | ||||||| |||||||||||||||||| ||||||||    
T  24201294 ttat-acaatcaatctaggaagttgtacaattaaagggatatctaaagattcttaactttaacat 24201231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 457 - 623
Target Start/End: Complemental strand, 23221124 - 23220958
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    |||||||||||||||||||||||||||||||||||  ||| | |||| | ||||||||||||| ||||||||||||| |  |||||||||||||||||||    
T  23221124 tctataatgagatcacacaccttgtatttataatggttttcccgtaagtgcattgaatgcttaattagtaagcactagcataggaagttgaatactctag 23221025  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||| |||  |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  23221024 gagtaatatcaatcaatctaggaagttgtacaattaaaggaatatctaaagattcttaattttaaca 23220958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 472 - 623
Target Start/End: Original strand, 2007099 - 2007250
Alignment:
Q  472 cacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggagtgataataatca 571  Q
    ||||||||||||||||||||  |||||| ||||||||| ||||||||| |||||||||| || || ||||| ||| ||||| ||||||| |||| |||||    
T  2007099 cacaccttgtatttataatggttttacaataaatacatcgaatgcttaattagtaagcattagcctaggaaattgtatactataggagtaataacaatca 2007198  T
Q  572 atctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  2007199 atctaggaagttgtacaattaaaggaatatctaaagattcttaattttaaca 2007250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 459 - 622
Target Start/End: Original strand, 33896751 - 33896914
Alignment:
Q  459 tataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctagga 558  Q
    |||||||||||| ||||||||||||||||||||  || ||| ||||||||||||||||||| ||||||||||||| || | ||||| | ||||||||| |    
T  33896751 tataatgagatcgcacaccttgtatttataatggtttaacaataaatacattgaatgcttaattagtaagcactagcctaagaagtagtatactctagca 33896850  T
Q  559 gtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaac 622  Q
    || | |||||||||||||||||| |||| | ||||||||||||||| |||||||||||||||||    
T  33896851 gtaaaaataatcaatctaggaagctgtacaattaaaggaatatctagagattcttaattttaac 33896914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 461 - 623
Target Start/End: Complemental strand, 17625903 - 17625741
Alignment:
Q  461 taatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggagt 560  Q
    ||||||||||||||   ||||||||||||||  |||||| ||| | ||||||||||||| ||||||||||||| || |||||||||||||||||||||||    
T  17625903 taatgagatcacacta-ttgtatttataatggttttacaataagtgcattgaatgcttaattagtaagcactagcctaggaagttgaatactctaggagt 17625805  T
Q  561 gataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaa-ttttaaca 623  Q
     |||| |||||||||||||||||||| |||||||  ||||||||||||||||||| ||||||||    
T  17625804 aataacaatcaatctaggaagttgtacagttaaacaaatatctaaagattcttaacttttaaca 17625741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 457 - 623
Target Start/End: Complemental strand, 17670294 - 17670128
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    |||||||||||||||| |   ||||||||||||||  |||||| ||| | ||||||||||||| ||||||||||||| || |||||||||||||||||||    
T  17670294 tctataatgagatcacgcta-ttgtatttataatggttttacaataagtgcattgaatgcttaattagtaagcactagcctaggaagttgaatactctag 17670196  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaa-ttttaaca 623  Q
    |||| |||| |||||||||||||||||||| |||||||  ||||||||||||||||||| ||||||||    
T  17670195 gagtaataacaatcaatctaggaagttgtacagttaaacaaatatctaaagattcttaacttttaaca 17670128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 457 - 624
Target Start/End: Original strand, 14931883 - 14932050
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    |||||||||||||||||||  ||||| || |||||  |||||| ||||| ||||| ||| ||| | ||||||||||| || |||||| || |||||||||    
T  14931883 tctataatgagatcacacatgttgtacttttaatggttttacaataaatgcattgcatgtttaatgagtaagcactagcctaggaagatgtatactctag 14931982  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaacat 624  Q
    |||| |||| |||||| ||||||||||||| | |||||| ||||||||||||||||||||||||||||    
T  14931983 gagtaataaaaatcaacctaggaagttgtacaattaaagaaatatctaaagattcttaattttaacat 14932050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 496 - 623
Target Start/End: Original strand, 25432744 - 25432870
Alignment:
Q  496 tacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggagtgataataatcaatctaggaagttgtatagttaaag 595  Q
    |||| ||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||||||| |||| |||||||||||||||||||| | ||||||    
T  25432744 tacaataaatacattgaatgcttatttagtaagcactagcctaggaaattgtatactctaggagtaataacaatcaatctaggaagttgtacaattaaag 25432843  T
Q  596 gaatatctaaagattcttaattttaaca 623  Q
    ||| || ||||| || ||||||||||||    
T  25432844 gaacatataaag-tttttaattttaaca 25432870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 457 - 574
Target Start/End: Original strand, 37469253 - 37469370
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||| || ||||||||||||||  |||||| ||||||||||||||||||| ||| ||||||||| || ||||||||| |||||||||    
T  37469253 tctataatgagatcacagactttgtatttataatggttttacaataaatacattgaatgcttaattaataagcactagcctaggaagttgtatactctag 37469352  T
Q  557 gagtgataataatcaatc 574  Q
    |||| |||| ||||||||    
T  37469353 gagtaataacaatcaatc 37469370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 501 - 622
Target Start/End: Original strand, 13220099 - 13220220
Alignment:
Q  501 taaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggagtgataataatcaatctaggaagttgtatagttaaaggaata 600  Q
    ||||| ||| ||||||||| | ||| | ||||| || | ||||||| ||||||||||||| |||| ||| || ||||||||||||| | |||||||||||    
T  13220099 taaatgcatagaatgcttaataagtgaacactagcctaagaagttgtatactctaggagtaataacaattaaactaggaagttgtacaattaaaggaata 13220198  T
Q  601 tctaaagattcttaattttaac 622  Q
    ||||||||||||||||||||||    
T  13220199 tctaaagattcttaattttaac 13220220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 472 - 600
Target Start/End: Original strand, 35942071 - 35942199
Alignment:
Q  472 cacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggagtgataataatca 571  Q
    |||| ||||||||||||||    ||||| ||||||||||| ||||||| | | ||||| |||||| |||||||||  |||||||||| | |||| |||||    
T  35942071 cacaacttgtatttataatagtgttacaataaatacattggatgcttaatgaataagccctaacctaggaagttgtttactctaggaataataacaatca 35942170  T
Q  572 atctaggaagttgtatagttaaaggaata 600  Q
    ||||||||||||||||||| ||| |||||    
T  35942171 atctaggaagttgtatagtgaaaagaata 35942199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 457 - 623
Target Start/End: Complemental strand, 11493942 - 11493767
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaa-tacattgaatgctt-atttagtaagcactaacccaggaagttga------- 547  Q
    |||||||||||| ||||||||||||||||||||||  ||| || |||| | |||||||||||| | | ||||||||||| || |||||||||            
T  11493942 tctataatgagaccacacaccttgtatttataatggttttgcaataaagtgcattgaatgctttaatgagtaagcactagcctaggaagttgtctaatgt 11493843  T
Q  548 atactctaggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    ||| ||||||||| |||| ||  |||||||||||||||| | |||||| ||| ||| |||||||||||||||||||    
T  11493842 atattctaggagtaataacaacaaatctaggaagttgtacaattaaagtaatttcttaagattcttaattttaaca 11493767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 551 - 619
Target Start/End: Complemental strand, 3304617 - 3304549
Alignment:
Q  551 ctctaggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaatttt 619  Q
    |||||||||| |||| |||||||||||||||||||| | |||||||||||||| ||||||| |||||||    
T  3304617 ctctaggagtaataacaatcaatctaggaagttgtacaattaaaggaatatctgaagattcctaatttt 3304549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 38500650 - 38500599
Alignment:
Q  572 atctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  38500650 atctaggaagttgtacaattaaaggaatatctaaagattcttaattttaaca 38500599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 25207859 - 25207812
Alignment:
Q  267 atattgcctgacatttctccgcttacgcctcaatgactggtactgagt 314  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||||||    
T  25207859 atattgcctgacatttctccgcttacgcttcaacgactgatactgagt 25207812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 518
Target Start/End: Complemental strand, 3304707 - 3304647
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgctt 518  Q
    ||||||||||| ||||||||||||||||||| |||  |||||| ||| | ||||||||||||    
T  3304707 tctataatgaggtcacacaccttgtatttat-atggttttacaataattgcattgaatgctt 3304647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 3e-53; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 457 - 623
Target Start/End: Original strand, 20269871 - 20270037
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    ||||||||||||||||||||||||||| |||||||  |||||| |||||||||||||| |||| |||||||||||||||| ||||||||| ||| | |||    
T  20269871 tctataatgagatcacacaccttgtatctataatgattttacaataaatacattgaatacttaattagtaagcactaacctaggaagttgtatagtgtag 20269970  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    |||| |||| |||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  20269971 gagtaataacaatcaatctaggaaattgtacaattaaaggaatatctaaagattcttaattttaaca 20270037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 457 - 623
Target Start/End: Original strand, 48596784 - 48596952
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagt---aagcactaacccaggaagttgaatactc 553  Q
    |||||||||||||||||| |||| |||||||||||  | |||| ||||||| ||||||||||||||| |    |||||||||| ||||||||  ||||||    
T  48596784 tctataatgagatcacac-ccttctatttataatggttatacaataaatactttgaatgcttatttattgagcagcactaaccaaggaagttttatactc 48596882  T
Q  554 taggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaaca 623  Q
    ||||||| |||| ||||||||||||||||| || | ||||||||||||||||| ||||||||||||||||    
T  48596883 taggagtaataacaatcaatctaggaagttataaaattaaaggaatatctaaaaattcttaattttaaca 48596952  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 267 - 455
Target Start/End: Original strand, 1199457 - 1199645
Alignment:
Q  267 atattgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaaggattg 366  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||| ||||||| |||||| |||||| | |||||||||||| |     
T  1199457 atattgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctgctccataacaatgtataaaggagta 1199556  T
Q  367 tctgcatacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatgacagacaatgactcaacaccatgttcctc 455  Q
     |||||  ||| | |||||||||||| |||  |||| |||   |  |||| ||||| ||| ||| |||||  |||||||||||||||||    
T  1199557 cctgcaagcttcgaattctgttcaatggaagcaattgccagatctttgattctgcacatggcagtcaatggatcaacaccatgttcctc 1199645  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 515 - 619
Target Start/End: Complemental strand, 26218874 - 26218770
Alignment:
Q  515 gcttatttagtaagcactaacccaggaagttgaatactctaggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattctta 614  Q
    ||||| |||||||||||||||| |||| |||| ||| ||||||| | |||| |||||||||| |||||| || | |||||||||||||||||||||||||    
T  26218874 gcttaattagtaagcactaacctaggatgttgtatattctaggaataataacaatcaatctatgaagttatacaattaaaggaatatctaaagattctta 26218775  T
Q  615 atttt 619  Q
    |||||    
T  26218774 atttt 26218770  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 460 - 554
Target Start/End: Original strand, 28767440 - 28767534
Alignment:
Q  460 ataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactct 554  Q
    |||||||||||||||||| |||||||||||||  |||||| |||||  |||||||||||| | ||||||||||| || ||||||||| |||||||    
T  28767440 ataatgagatcacacaccctgtatttataatggttttacaataaatgtattgaatgcttaatgagtaagcactagcctaggaagttgtatactct 28767534  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 495 - 610
Target Start/End: Complemental strand, 55242454 - 55242339
Alignment:
Q  495 ttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggagtgataataatcaatctaggaagttgtatagttaaa 594  Q
    ||||| |||||||||| || ||||| | | |||||||||||| ||||||||| ||||||||||  |  ||| |||||||||||||||||||| | |||||    
T  55242454 ttacaataaatacatttaaagcttaatgaataagcactaacctaggaagttgtatactctagggatattaacaatcaatctaggaagttgtacatttaaa 55242355  T
Q  595 ggaatatctaaagatt 610  Q
    |||||| ||| |||||    
T  55242354 ggaataactacagatt 55242339  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 496 - 610
Target Start/End: Original strand, 44399596 - 44399709
Alignment:
Q  496 tacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggagtgataataatcaatctaggaagttgtatagttaaag 595  Q
    ||||||| || ||||||||||||| | |   | |||||||||||||||||| ||||||||| |   |||| |||||||||||||||||||||| ||||||    
T  44399596 tacagtatatgcattgaatgcttaataaaacaacactaacccaggaagttgtatactctagaaaa-ataacaatcaatctaggaagttgtataattaaag 44399694  T
Q  596 gaatatctaaagatt 610  Q
    ||||||||| |||||    
T  44399695 gaatatctacagatt 44399709  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 460 - 634
Target Start/End: Original strand, 109556 - 109729
Alignment:
Q  460 ataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggag 559  Q
    ||||||| ||||||| ||||||||||||||||   |||| ||||||  ||| |||| |||   | ||||||||| |  || |||||| |||| | || ||    
T  109556 ataatgaaatcacaccccttgtatttataatggtattactgtaaatgtattaaatgtttaaggaataagcactagcttagaaagttgtatacgcgagaag 109655  T
Q  560 tgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaacatccctcctcaa 634  Q
    | |||| ||||||||||| |||||||| | |||||| |||||||||||||| ||||  |||||| ||||||||||    
T  109656 taataacaatcaatctagaaagttgtacaattaaagtaatatctaaagatttttaa-cttaacacccctcctcaa 109729  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 466 - 580
Target Start/End: Complemental strand, 40268474 - 40268360
Alignment:
Q  466 agatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctaggagtgataa 565  Q
    |||||||||| ||||||||||||||  | ||||| |||||| |||||||| ||| | | |||||||||||| | ||||||  ||||||||||| |  |||    
T  40268474 agatcacacaacttgtatttataatagcgttacaataaatagattgaatggttaatgaataagcactaacctatgaagttatatactctaggaatattaa 40268375  T
Q  566 taatcaatctaggaa 580  Q
     ||||||||||||||    
T  40268374 caatcaatctaggaa 40268360  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 621
Target Start/End: Original strand, 28767629 - 28767710
Alignment:
Q  540 gaagttgaatactctaggagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaa 621  Q
    ||||||| |||||||||  || |||| |||||||||||||||||||| | ||||| |||||| |||||||| ||||||||||    
T  28767629 gaagttgtatactctagttgtaataacaatcaatctaggaagttgtacaattaaatgaatatttaaagatttttaattttaa 28767710  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 494 - 623
Target Start/End: Complemental strand, 46143575 - 46143445
Alignment:
Q  494 tttacagtaaatacattgaatgctt-atttagtaagcactaacccaggaagttgaatactctaggagtgataataatcaatctaggaagttgtatagtta 592  Q
    |||||| | |||||||||||||||| | ||| | |||||||||  || |||||| ||| |||||   | | || ||||| |||||  ||||||||| |||    
T  46143575 tttacaatcaatacattgaatgctttaattacttagcactaacttagtaagttgtatagtctagagttaacaacaatcagtctagagagttgtataatta 46143476  T
Q  593 aaggaatatctaaagattcttaattttaaca 623  Q
    ||||||||||||| ||||||||| |||||||    
T  46143475 aaggaatatctaacgattcttaaatttaaca 46143445  T

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Target: chr6 (Bit Score: 93; Significance: 6e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 457 - 621
Target Start/End: Original strand, 15869362 - 15869526
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactctag 556  Q
    |||||||||||| ||||| ||||||||||||||||  |||||| ||||||||||||||||||| | ||||||||||| || | ||||||| |||||||||    
T  15869362 tctataatgagaacacacgccttgtatttataatggttttacaataaatacattgaatgcttaatgagtaagcactagcctatgaagttgcatactctag 15869461  T
Q  557 gagtgataataatcaatctaggaagttgtatagttaaaggaatatctaaagattcttaattttaa 621  Q
    |||| |||| |||||||||||| |||||||   | ||||||||||||||||||||||||||||||    
T  15869462 gagtaataacaatcaatctagggagttgtaccatgaaaggaatatctaaagattcttaattttaa 15869526  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 271 - 455
Target Start/End: Original strand, 32687273 - 32687457
Alignment:
Q  271 tgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaaggattgtctg 370  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||| | |||| ||||||| |||||| |||||||| |||||||||||| |  |||    
T  32687273 tgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctgctccatagcaatgtataaaggagtacctg 32687372  T
Q  371 catacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatgacagacaatgactcaacaccatgttcctc 455  Q
    ||  ||  | |||||||||||| ||| ||||| ||| | |  |||| ||||| ||| ||| |||||  |||||||||||||||||    
T  32687373 caagctctgaattctgttcaatggaagtaattgccaggtccttgattctgcacatggcagtcaatggatcaacaccatgttcctc 32687457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 267 - 455
Target Start/End: Original strand, 19810982 - 19811170
Alignment:
Q  267 atattgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaaggattg 366  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||  ||||||| |||||| |||||||| |||||||||||| |     
T  19810982 atattgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggaatgagctataatctgctccatagcaatgtataaaggagta 19811081  T
Q  367 tctgcatacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatgacagacaatgactcaacaccatgttcctc 455  Q
     |||||  ||| | |||||||||||| |||  |||| |||   |  |||| ||||| ||| ||| |||||  |||||||||||||||||    
T  19811082 cctgcaagcttcgaattctgttcaatggaagcaattgccagatctttgattctgcacatggcagtcaatggatcaacaccatgttcctc 19811170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 363
Target Start/End: Original strand, 14767476 - 14767544
Alignment:
Q  295 ctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaagga 363  Q
    |||||||||  ||||||||| |||   || ||||||||||||||||  |||||| ||||||||||||||    
T  14767476 ctcaatgacaagtactgagtggcaagtatagcctgagctacaatctcctccatatccatgtataaagga 14767544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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