View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6353_high_13 (Length: 295)
Name: NF6353_high_13
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6353_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 3164267 - 3163992
Alignment:
| Q |
1 |
gagcaggctaaagtttcgcaatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgtgaaaatggcttagaaagtccagtatcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3164267 |
gagcaggctaaagtttcgcaatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgtgaaaatggcttagaaagtccagtatcac |
3164168 |
T |
|
| Q |
101 |
atttaccatcccagaaattggagagcgttaaaatttccattaaagaaacatcaaaggatggcctatctgccggaagtttcacacacgaaacgaggacaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3164167 |
atttaccatcccagaaattggagagcgttaaaacttccattaaagaaacatcaaaggatggcctatcttccggaagtttcacacacgaaacgaggacaaa |
3164068 |
T |
|
| Q |
201 |
gtggtcccctgaaacccaggttccagctgcgtctgccgatgataacaagactaagcctgaagttttgcaatctact |
276 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3164067 |
ttggtcccctgaaacccaggttccagctgcgtctgctgatgataacaagactaagcctgaagttttgcaatctact |
3163992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 3164819 - 3164544
Alignment:
| Q |
1 |
gagcaggctaaagtttcgcaatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgtgaaaatggcttagaaagtccagtatcac |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||| ||||||||||||||||| |||||||||| ||||||| |
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| T |
3164819 |
gagcaggctaaagtttcgcaatcaaagcttgaagtcctcgaggctgagaagaacgagaaaaaacatgattgtgaaaatggcatagaaagtcctgtatcac |
3164720 |
T |
|
| Q |
101 |
atttaccatcccagaaattggagagcgttaaaatttccattaaagaaacatcaaaggatggcctatctgccggaagtttcacacacgaaacgaggacaaa |
200 |
Q |
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|| |||| ||||||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||| |
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| T |
3164719 |
atgtaccttcccagaaattggagagagttaaatcttccactaaagaaacatcaaaggatggcctgtctactggaagtttcactcacgaaacgaggacaaa |
3164620 |
T |
|
| Q |
201 |
gtggtcccctgaaacccaggttccagctgcgtctgccgatgataacaagactaagcctgaagttttgcaatctact |
276 |
Q |
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||||| |||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3164619 |
ctggtctcctgaatcccaggttccagcagcatctgccgatgataatgagactaagcctgaagttttgcaatctact |
3164544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 3165076 - 3164820
Alignment:
| Q |
20 |
aatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgtgaaaatggcttagaaagtccagtatcacatttaccatcccagaaatt |
119 |
Q |
| |
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|||||||| |||| | |||| |||| |||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |
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| T |
3165076 |
aatcaaagattgaagacctcgaggctgagaagaacgaggaaaaagatgattgtgaaaatggcttagaaagtccagcatcacatttacctttgcagaaatt |
3164977 |
T |
|
| Q |
120 |
ggagagcgttaaaatttccattaaagaaacatcaaaggatggcctatctgccggaagtttcacacacgaaacgaggacaaagtggtcccctgaaacccag |
219 |
Q |
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|||||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||| ||||| |
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| T |
3164976 |
ggagagagttaaatcttccaccaaggaaacatcaaaggatggcctatctgccggaagtttcactcacgaaacgagaacaaactggtctcctgaatcccag |
3164877 |
T |
|
| Q |
220 |
gttccagctgcgtctgccgatgataacaagactaagcctgaagttttgcaatctact |
276 |
Q |
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||| |||| || ||||||||| ||||| ||||||||| ||||||||||||| ||||| |
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| T |
3164876 |
gtttcagcggcatctgccgataataacgagactaagcttgaagttttgcaacctact |
3164820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 3164543 - 3164268
Alignment:
| Q |
1 |
gagcaggctaaagtttcgcaatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgtgaaaatggcttagaaagtccagtatcac |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| |||| |||||||| ||||||||| ||||||||||||| || |||||||||| ||||||| |
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| T |
3164543 |
gagcaggctaaagttccgcaatcaaagcttgaaatcctcgaggctgagaagaacgagaaaaaacatgattgtgaaaacggattagaaagtctcgtatcac |
3164444 |
T |
|
| Q |
101 |
atttaccatcccagaaattggagagcgttaaaatttccattaaagaaacatcaaaggatggcctatctgccggaagtttcacacacgaaacgaggacaaa |
200 |
Q |
| |
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|| ||| ||||||||||||||||| |||||| || || |||||| |||||||||||||||||||||||| |||||||||| | | ||||||||||||| |
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| T |
3164443 |
atgcaccttcccagaaattggagagagttaaatcttgcactaaagagacatcaaaggatggcctatctgccagaagtttcactcgcaaaacgaggacaaa |
3164344 |
T |
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| Q |
201 |
gtggtcccctgaaacccaggttccagctgcgtctgccgatgataacaagactaagcctgaagttttgcaatctact |
276 |
Q |
| |
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||||| | |||| | ||| ||||||| || ||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
3164343 |
atggtctcatgaatcacagattccagcggcatctgccgatgatagcgagactaagcctgaagttttgcaatctact |
3164268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 3163991 - 3163716
Alignment:
| Q |
1 |
gagcaggctaaagtttcgcaatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgtgaaaatggcttagaaagtccagtatcac |
100 |
Q |
| |
|
||||||| |||||||||| |||||||||||| |||||||||| |||||||| || ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3163991 |
gagcaggataaagtttcgggatcaaagcttgaagtcctcaaggatgagaagaaggaaaaaaaagatgattgtcaaaatggcttagaaagtccagtatcac |
3163892 |
T |
|
| Q |
101 |
atttaccatcccagaaattggagagcgttaaaatttccattaaagaaacatcaaaggatggcctatctgccggaagtttcacacacgaaacgaggacaaa |
200 |
Q |
| |
|
|||||||||| ||||||||| ||| ||| || |||| |||||| ||||||||||| || |||||| ||| ||||||||||| ||||| |||||||| |
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| T |
3163891 |
atttaccatctcagaaattgatgagagttgaatcttccgctaaagagacatcaaaggaaggattatctgtcgggagtttcacacaagaaacaaggacaaa |
3163792 |
T |
|
| Q |
201 |
gtggtcccctgaaacccaggttccagctgcgtctgccgatgataacaagactaagcctgaagttttgcaatctact |
276 |
Q |
| |
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||||| |||||| |||||||||||||||| ||| |||||||||| | |||||||||||||||| ||||||||| |
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| T |
3163791 |
ctggtctcctgaatcccaggttccagctgcatcttccgatgataatgaaactaagcctgaagtttcacaatctact |
3163716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 22844322 - 22844119
Alignment:
| Q |
20 |
aatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgtgaaaatggcttagaaagtccagtatcacatttaccatcccagaaatt |
119 |
Q |
| |
|
|||||||| |||| | ||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||| || || ||||| |
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| T |
22844322 |
aatcaaagattgaagacctcaaggctgagaagaatgaggaaaaagatgattgtgaaaatggcttaaaaagtccaacatcacatttaccttcgcaaaaatt |
22844223 |
T |
|
| Q |
120 |
ggagagcgttaaaattt--ccattaaagaaacatcaaaggatggcctatctgccggaagtttcacacacgaaacgaggacaaagtggtcccctgaaaccc |
217 |
Q |
| |
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|||||| |||||| || ||| || ||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |||| |||||| ||| |
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| T |
22844222 |
ggagagagttaaaccttccccaccaaggaaacatcaaaggatggcctatctgccggaagttttactcacgaaacgaggataaactggtgtcctgaatccc |
22844123 |
T |
|
| Q |
218 |
aggt |
221 |
Q |
| |
|
|||| |
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|
| T |
22844122 |
aggt |
22844119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 35867097 - 35867149
Alignment:
| Q |
20 |
aatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgt |
72 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||||||| |||||||||| |
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| T |
35867097 |
aatcaaagcttgaattcctcaaggccgacaagaatgagaaaagagatgattgt |
35867149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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