View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6353_high_14 (Length: 273)
Name: NF6353_high_14
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6353_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 35364044 - 35363793
Alignment:
| Q |
1 |
tactgtattattcattgatgatgtttgtaaatatttagtcccctaagaaataaagtcttgataacaaattaagnnnnnnncttttctgaaaggtttattc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |
|
|
| T |
35364044 |
tactctattattcattgatgatgtttgttaatatttagtcccctaagaaataaagtcttgataacaaattaagtttttttcttttctgaaaaggttattc |
35363945 |
T |
|
| Q |
101 |
aaattaagttatttactgnnnnnnnn-attacattcctaatttttcctatcaataatat--ctctattaacaaaaatttaacatcaaataatatcaaaat |
197 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
35363944 |
aaattaagttatttactgtttttttttattacattcctaattttttctatcaataatatatctctattaacaaaaattaaacgtcaaataatatcaaaat |
35363845 |
T |
|
| Q |
198 |
cgaatcaattttaaatgtaaaatagatagattggtgaaaaaattggtatata |
249 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35363844 |
cgaatcaattttatatgtaaaatagatagattggtgaaaaaattggtatata |
35363793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University