View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6353_high_19 (Length: 238)

Name: NF6353_high_19
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6353_high_19
NF6353_high_19
[»] chr2 (5 HSPs)
chr2 (1-222)||(5365389-5365609)
chr2 (190-222)||(7928299-7928331)
chr2 (145-222)||(40682348-40682427)
chr2 (134-204)||(449903-449975)
chr2 (194-222)||(35379020-35379048)
[»] chr3 (2 HSPs)
chr3 (134-222)||(21367705-21367795)
chr3 (131-218)||(402481-402570)
[»] chr8 (5 HSPs)
chr8 (134-221)||(3536887-3536976)
chr8 (189-222)||(32840985-32841018)
chr8 (147-222)||(33808341-33808418)
chr8 (189-222)||(1930073-1930106)
chr8 (181-222)||(31751548-31751589)
[»] chr1 (3 HSPs)
chr1 (189-222)||(38503464-38503497)
chr1 (131-221)||(6102193-6102284)
chr1 (147-222)||(47498794-47498871)
[»] chr6 (2 HSPs)
chr6 (134-222)||(2455029-2455116)
chr6 (182-222)||(9912183-9912223)
[»] chr7 (1 HSPs)
chr7 (189-222)||(34035955-34035988)
[»] chr5 (3 HSPs)
chr5 (181-222)||(1465011-1465052)
chr5 (181-222)||(7985007-7985048)
chr5 (181-222)||(9202739-9202780)
[»] chr4 (2 HSPs)
chr4 (183-220)||(49939944-49939981)
chr4 (137-222)||(49202683-49202770)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5365389 - 5365609
Alignment:
Q  1 atattgacttctattgttatattggatgttaatctttggctcaattcattttatttcaaaggttttaatttcaatcccttttacttttggttcccaatta 100  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5365389 atattgaattctattgttatattggatgttaagctttggctcaattcattttatttcaaaggttttaatttcaatcccttttacttttggttcccaatta 5365488  T
Q  101 cttggagcataatttgattggnnnnnnnnnagtttatctactagcataagttttgtatgattgtttgagaggacttatagacagcttttgacattgttca 200  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5365489 cttggagcataatttgattgg-tttttttgagtttatctactagcataagttttgtatgattgtttgagaggacttatagacagcttttgacattgttca 5365587  T
Q  201 taagttgttttcagcttatttt 222  Q
    ||||||||||||||||||||||    
T  5365588 taagttgttttcagcttatttt 5365609  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 7928299 - 7928331
Alignment:
Q  190 gacattgttcataagttgttttcagcttatttt 222  Q
    |||||||||||||||||||||||||||||||||    
T  7928299 gacattgttcataagttgttttcagcttatttt 7928331  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 40682348 - 40682427
Alignment:
Q  145 cataagttttgtatgattgtttgagaggacttat--agacagcttttgacattgttcataagttgttttcagcttatttt 222  Q
    ||||||||||||  ||||||||| ||| |||| |  | | ||||| ||||||||||||||||||||||||| ||||||||    
T  40682348 cataagttttgtgagattgtttgggagaacttgttaaaatagcttatgacattgttcataagttgttttcaacttatttt 40682427  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 449975 - 449903
Alignment:
Q  134 ttatctactagcataagttttgtatgattgtttgagaggacttat--agacagcttttgacattgttcataag 204  Q
    ||||||||||||||||||||| |  ||||||||| |||||||| |  | ||||||| ||||||| ||||||||    
T  449975 ttatctactagcataagttttatgagattgtttgggaggacttttgaaaacagcttatgacatttttcataag 449903  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 35379020 - 35379048
Alignment:
Q  194 ttgttcataagttgttttcagcttatttt 222  Q
    |||||||||||||||||||||||||||||    
T  35379020 ttgttcataagttgttttcagcttatttt 35379048  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 21367795 - 21367705
Alignment:
Q  134 ttatctactagcataagttttgtatgattgtttgagaggacttat--agacagcttttgacattgttcataagttgttttcagcttatttt 222  Q
    |||||||| ||||||||||||||  || |||||| ||| ||||||  | ||||||| |||||||||||| ||| |||||||||||||||||    
T  21367795 ttatctaccagcataagttttgtgggactgtttgggagaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttatttt 21367705  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 402481 - 402570
Alignment:
Q  131 agtttatctactagcataagttttgtatgattgtttgagaggacttat--agacagcttttgacattgttcataagttgttttcagctta 218  Q
    |||||||| |||| ||||||||||| | || |||||| ||| || |||  | ||||||| |||||||||||||||| |||||||||||||    
T  402481 agtttatcaactaacataagttttgcaagactgtttgggagaacgtatgaaaacagcttatgacattgttcataagctgttttcagctta 402570  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 3536887 - 3536976
Alignment:
Q  134 ttatctactagcataagttttgtatgattgtttgagaggacttataga--cagcttttgacattgttcataagttgttttcagcttattt 221  Q
    ||||||||| ||||||| ||||| ||| | || ||||| | ||| |||  |||||| ||||||||||||||| |||||||||||||||||    
T  3536887 ttatctactggcataagctttgtgtgactattcgagagaatttacagaaacagcttatgacattgttcataaattgttttcagcttattt 3536976  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 32840985 - 32841018
Alignment:
Q  189 tgacattgttcataagttgttttcagcttatttt 222  Q
    ||||||||||||||||||||||||||||||||||    
T  32840985 tgacattgttcataagttgttttcagcttatttt 32841018  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 33808418 - 33808341
Alignment:
Q  147 taagttttgtatgattgtttgagaggacttat--agacagcttttgacattgttcataagttgttttcagcttatttt 222  Q
    |||||||| | |||||||||| ||| ||||||  | | ||||| ||| ||||||||||||||||||| ||||||||||    
T  33808418 taagttttttgtgattgtttgggagaacttatgaaaatagcttatgatattgttcataagttgtttttagcttatttt 33808341  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 1930106 - 1930073
Alignment:
Q  189 tgacattgttcataagttgttttcagcttatttt 222  Q
    |||||||||||||||| |||||||||||||||||    
T  1930106 tgacattgttcataagctgttttcagcttatttt 1930073  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 31751548 - 31751589
Alignment:
Q  181 acagcttttgacattgttcataagttgttttcagcttatttt 222  Q
    ||||||| |||||||||||||||| | |||||||||||||||    
T  31751548 acagcttatgacattgttcataagctattttcagcttatttt 31751589  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 38503464 - 38503497
Alignment:
Q  189 tgacattgttcataagttgttttcagcttatttt 222  Q
    ||||||||||||||||||||||||||||||||||    
T  38503464 tgacattgttcataagttgttttcagcttatttt 38503497  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 6102284 - 6102193
Alignment:
Q  131 agtttatctactagcataagttttgtatgattgtttgagaggact-tatagacagcttttgacattgttcataagttgttttcagcttattt 221  Q
    |||||||||||  |||||| ||||||  ||||||||| ||| ||| |  | ||||||| ||| ||||||||||| |||||||||||||||||    
T  6102284 agtttatctaccggcataaattttgtgagattgtttgggagaactatgaaaacagcttatgatattgttcataaattgttttcagcttattt 6102193  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 47498794 - 47498871
Alignment:
Q  147 taagttttgtatgattgtttgagaggacttat--agacagcttttgacattgttcataagttgttttcagcttatttt 222  Q
    |||||||| | |||||||||| ||| ||||||  | | ||||| ||| ||||||||||||||||||| ||||||||||    
T  47498794 taagttttttgtgattgtttgggagaacttatgaaaatagcttatgatattgttcataagttgtttttagcttatttt 47498871  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 2455116 - 2455029
Alignment:
Q  134 ttatctactagcataagttttgtatgattgtttgagaggacttatagacagcttttgacattgttcataagttgttttcagcttatttt 222  Q
    |||||||||| ||||||||||||  || |||||| ||| |||| | || | ||| |||||||||||||||  |||||||||||||||||    
T  2455116 ttatctactaacataagttttgtgagactgtttgggagaacttct-gaaaacttatgacattgttcataacctgttttcagcttatttt 2455029  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 9912183 - 9912223
Alignment:
Q  182 cagcttttgacattgttcataagttgttttcagcttatttt 222  Q
    |||||| |||||||||||||||| |||||| ||||||||||    
T  9912183 cagcttatgacattgttcataagctgttttgagcttatttt 9912223  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 34035988 - 34035955
Alignment:
Q  189 tgacattgttcataagttgttttcagcttatttt 222  Q
    ||||||||||||||||||||||||| ||||||||    
T  34035988 tgacattgttcataagttgttttcaacttatttt 34035955  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 1465011 - 1465052
Alignment:
Q  181 acagcttttgacattgttcataagttgttttcagcttatttt 222  Q
    ||||||| || ||||| |||||||||||||||||||||||||    
T  1465011 acagcttatggcattgctcataagttgttttcagcttatttt 1465052  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 7985048 - 7985007
Alignment:
Q  181 acagcttttgacattgttcataagttgttttcagcttatttt 222  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  7985048 acagcttgtgacgttgttcataagctgttttcagcttatttt 7985007  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 9202739 - 9202780
Alignment:
Q  181 acagcttttgacattgttcataagttgttttcagcttatttt 222  Q
    ||||||| |||||||||||||||| ||||| |||||||||||    
T  9202739 acagcttatgacattgttcataagctgtttccagcttatttt 9202780  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 49939944 - 49939981
Alignment:
Q  183 agcttttgacattgttcataagttgttttcagcttatt 220  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  49939944 agcttatgacattgttcataagctgttttcagcttatt 49939981  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 49202770 - 49202683
Alignment:
Q  137 tctactagcataagttttgtatgattgtttgagaggacttataga--cagcttttgacattgttcataagttgttttcagcttatttt 222  Q
    |||||| |||||||||||||  || ||||||  || ||||||| |  ||| || | ||||||||||||||||||||||| ||||||||    
T  49202770 tctacttgcataagttttgtgagactgtttggaagaacttataaaaccagattatcacattgttcataagttgttttcaacttatttt 49202683  T

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