View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6353_high_20 (Length: 238)

Name: NF6353_high_20
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6353_high_20
NF6353_high_20
[»] scaffold0007 (3 HSPs)
scaffold0007 (4-223)||(73738-73957)
scaffold0007 (154-223)||(74029-74098)
scaffold0007 (15-64)||(74031-74080)
[»] chr3 (1 HSPs)
chr3 (3-223)||(616397-616617)
[»] chr6 (10 HSPs)
chr6 (13-223)||(28489043-28489253)
chr6 (13-223)||(29801453-29801663)
chr6 (13-223)||(28475623-28475833)
chr6 (13-223)||(29691320-29691530)
chr6 (111-223)||(29672623-29672735)
chr6 (137-223)||(29721440-29721526)
chr6 (154-223)||(28488902-28488971)
chr6 (154-223)||(29801312-29801381)
chr6 (143-179)||(29705212-29705248)
chr6 (26-121)||(29705243-29705338)
[»] scaffold0012 (2 HSPs)
scaffold0012 (90-189)||(237204-237303)
scaffold0012 (164-223)||(210598-210657)


Alignment Details
Target: scaffold0007 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 73738 - 73957
Alignment:
Q  4 aatcaagattgttccacctcttagtttagcttcactagaagaactcgatctttcacattgttatcaactagacagctttcctctcatggtgaatggattt 103  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  73738 aatcaagactgttccacctcttagtttggcttcactagaagaactcaatctttcacattgttatcaactagacagctttcctctcatggtgaatggattt 73837  T
Q  104 gttggagagcttaaaatcttgagggttacaaactgcaccaaaatcagaattattccatctctcatgttaccttctctagaagaacttgatatttcatatt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||    
T  73838 gttggagagcttaaaatcttgagggttacaaactgcaccaaaatcagaattattccatatctcatgttaccttctctagaagaacttgaactttcatatt 73937  T
Q  204 gtagtaatcttgagagtttt 223  Q
    ||||||||||||||||||||    
T  73938 gtagtaatcttgagagtttt 73957  T

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Target: scaffold0007; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 74029 - 74098
Alignment:
Q  154 tattccatctctcatgttaccttctctagaagaacttgatatttcatattgtagtaatcttgagagtttt 223  Q
    ||||||| ||||||||||| |||||||||||||||| ||| ||||| |||||| |  |||||||||||||    
T  74029 tattccacctctcatgttagcttctctagaagaactcgatctttcaaattgtattggtcttgagagtttt 74098  T

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Target: scaffold0007; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 74031 - 74080
Alignment:
Q  15 ttccacctcttagtttagcttcactagaagaactcgatctttcacattgt 64  Q
    |||||||||| |  |||||||| ||||||||||||||||||||| |||||    
T  74031 ttccacctctcatgttagcttctctagaagaactcgatctttcaaattgt 74080  T

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Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 616397 - 616617
Alignment:
Q  3 aaatcaagattgttccacctcttagtttagcttcactagaagaactcgatctttcacattgttatcaactagacagctttcctctcatggtgaatggatt 102  Q
    ||||| ||| |||||| ||||| | ||| |||||| | |||||||| |||||||||| |||||||   ||||| || ||||||||| |||||||||||||    
T  616397 aaatccagagtgttccgcctctcaatttggcttcattggaagaacttgatctttcacgttgttatagtctagaaagttttcctctcctggtgaatggatt 616496  T
Q  103 tgttggagagcttaaaatcttgagggttacaaactgcaccaaaatcagaattattccatctctcatgttaccttctctagaagaacttgatatttcatat 202  Q
    | ||||||| ||||||||||| ||| ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||    
T  616497 ttttggagaacttaaaatcttaaggattataaaatgcaccaaaatcaaaattattccatctctcatgttaccttctctagaagaactcgatctttcagat 616596  T
Q  203 tgtagtaatcttgagagtttt 223  Q
    |||| ||||||||||| ||||    
T  616597 tgtactaatcttgagaatttt 616617  T

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Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 28489253 - 28489043
Alignment:
Q  13 tgttccacctcttagtttagcttcactagaagaactcgatctttcacattgttatcaactagacagctttcctctcatggtgaatggatttgttggagag 112  Q
    |||||||||||| ||||| |||||||| |||||| | ||  ||||||||||||||   ||||| ||||||||||||||||||||| ||||| ||||  |     
T  28489253 tgttccacctctcagtttggcttcactggaagaaatagaattttcacattgttatagcctagaaagctttcctctcatggtgaatagatttcttggtaaa 28489154  T
Q  113 cttaaaatcttgagggttacaaactgcaccaaaatcagaattattccatctctcatgttaccttctctagaagaacttgatatttcatattgtagtaatc 212  Q
    ||||||||||| ||||||| ||| || |||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||| |  ||    
T  28489153 cttaaaatcttaagggttataaattgtaccaaaatcaaaattattccatcactcattttaccttctctagaagaacttgatctttcagattgtactggtc 28489054  T
Q  213 ttgagagtttt 223  Q
    |||||||||||    
T  28489053 ttgagagtttt 28489043  T

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Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 29801663 - 29801453
Alignment:
Q  13 tgttccacctcttagtttagcttcactagaagaactcgatctttcacattgttatcaactagacagctttcctctcatggtgaatggatttgttggagag 112  Q
    |||||||||||| ||||| |||||||| |||||| | ||  ||||||||||||||   ||||| ||||||||||||||||||||| ||||| ||||  |     
T  29801663 tgttccacctctcagtttggcttcactggaagaaatagaattttcacattgttatagcctagaaagctttcctctcatggtgaatagatttcttggtaaa 29801564  T
Q  113 cttaaaatcttgagggttacaaactgcaccaaaatcagaattattccatctctcatgttaccttctctagaagaacttgatatttcatattgtagtaatc 212  Q
    ||||||||||| ||||||| ||| || |||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||| |  ||    
T  29801563 cttaaaatcttaagggttataaattgtaccaaaatcaaaattattccatcactcattttaccttctctagaagaacttgatctttcagattgtactggtc 29801464  T
Q  213 ttgagagtttt 223  Q
    |||||||||||    
T  29801463 ttgagagtttt 29801453  T

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Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 28475833 - 28475623
Alignment:
Q  13 tgttccacctcttagtttagcttcactagaagaactcgatctttcacattgttatcaactagacagctttcctctcatggtgaatggatttgttggagag 112  Q
    ||||||||| || | || ||||||||| | ||||||| |||||||||| ||| ||   ||||| || ||||||||| |||||| ||||||| |||||||     
T  28475833 tgttccaccactcaattcagcttcactggtagaactcaatctttcacactgtcatagtctagaaagttttcctctcgtggtgagtggatttcttggagaa 28475734  T
Q  113 cttaaaatcttgagggttacaaactgcaccaaaatcagaattattccatctctcatgttaccttctctagaagaacttgatatttcatattgtagtaatc 212  Q
    ||||||||||||||||||| |   |||| |||||||||| |||||| ||||||| |||||||||||||||||||||| ||| ||| | |||||| || ||    
T  28475733 cttaaaatcttgagggttataggttgcagcaaaatcagacttattcaatctctcgtgttaccttctctagaagaactcgatcttttagattgtactagtc 28475634  T
Q  213 ttgagagtttt 223  Q
    |||| ||||||    
T  28475633 ttgacagtttt 28475623  T

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Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 29691530 - 29691320
Alignment:
Q  13 tgttccacctcttagtttagcttcactagaagaactcgatctttcacattgttatcaactagacagctttcctctcatggtgaatggatttgttggagag 112  Q
    ||||||||| || | || ||||||||| | ||||||| |||||||||| ||| ||   ||||| || ||||||| | |||||| ||||||| |||||||     
T  29691530 tgttccaccactcaattcagcttcactggtagaactcaatctttcacactgtcatagtctagaaagttttcctcccgtggtgagtggatttcttggagaa 29691431  T
Q  113 cttaaaatcttgagggttacaaactgcaccaaaatcagaattattccatctctcatgttaccttctctagaagaacttgatatttcatattgtagtaatc 212  Q
    ||||||||||||||||||| |    ||| |||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||| | |||||| || ||    
T  29691430 cttaaaatcttgagggttataggtagcagcaaaatcagacttattccatctctcgtgttaccttctctagaagaactcgatcttttagattgtactagtc 29691331  T
Q  213 ttgagagtttt 223  Q
    |||| ||||||    
T  29691330 ttgacagtttt 29691320  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 29672735 - 29672623
Alignment:
Q  111 agcttaaaatcttgagggttacaaactgcaccaaaatcagaattattccatctctcatgttaccttctctagaagaacttgatatttcatattgtagtaa 210  Q
    ||||||||||| ||||||||| ||  |||||| |||||   | | ||||||||||||||||||| ||||||||| |||||||| |||||||||||| |||    
T  29672735 agcttaaaatcctgagggttataagttgcaccgaaatccacagtcttccatctctcatgttaccctctctagaaaaacttgatctttcatattgtattaa 29672636  T
Q  211 tcttgagagtttt 223  Q
    |||||||||||||    
T  29672635 tcttgagagtttt 29672623  T

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Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 29721526 - 29721440
Alignment:
Q  137 tgcaccaaaatcagaattattccatctctcatgttaccttctctagaagaacttgatatttcatattgtagtaatcttgagagtttt 223  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||  || ||||| | |||||||||||||||| ||||    
T  29721526 tgcaccgaaatcagaattattccacctctcatgttaccttctctagaagaactctatctttcagagtgtagtaatcttgagaatttt 29721440  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 28488971 - 28488902
Alignment:
Q  154 tattccatctctcatgttaccttctctagaagaacttgatatttcatattgtagtaatcttgagagtttt 223  Q
    ||||||| ||||||||||| |||||||||||||||||||| ||||| |||||| || |||||||||||||    
T  28488971 tattccaactctcatgttagcttctctagaagaacttgatctttcagattgtattagtcttgagagtttt 28488902  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 29801381 - 29801312
Alignment:
Q  154 tattccatctctcatgttaccttctctagaagaacttgatatttcatattgtagtaatcttgagagtttt 223  Q
    ||||||| ||||||||||| |||||||||||||||||||| ||||| |||||| || |||||||||||||    
T  29801381 tattccaactctcatgttagcttctctagaagaacttgatctttcagattgtattagtcttgagagtttt 29801312  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 29705248 - 29705212
Alignment:
Q  143 aaaatcagaattattccatctctcatgttaccttctc 179  Q
    |||||||||||||||||||||||||||||||||||||    
T  29705248 aaaatcagaattattccatctctcatgttaccttctc 29705212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 29705338 - 29705243
Alignment:
Q  26 agtttagcttcactagaagaactcgatctttcacattgttatcaactagacagctttcctctcatggtgaatggatttgttggagagcttaaaatc 121  Q
    ||||| |||||||| |||||| ||||||||||| ||||| ||   |  || |||||| |||||||||||||| ||| ||||||||| |||||||||    
T  29705338 agttttgcttcactggaagaattcgatctttcatattgtgatgctccggaaagctttgctctcatggtgaatagatatgttggagaacttaaaatc 29705243  T

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Target: scaffold0012 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 237303 - 237204
Alignment:
Q  90 tggtgaatggatttgttggagagcttaaaatcttgagggttacaaactgcaccaaaatcagaattattccatctctcatgttaccttctctagaagaact 189  Q
    |||||||||||||||||||| | ||||||||||||||||||| |   ||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  237303 tggtgaatggatttgttggaaaacttaaaatcttgagggttataggatgcaccaaaatcaaaattattccatctctcatattaccttctctagaagaact 237204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 210657 - 210598
Alignment:
Q  164 ctcatgttaccttctctagaagaacttgatatttcatattgtagtaatcttgagagtttt 223  Q
    |||||||||||||||||||||||||||||| |||||   ||||||| ||||||| |||||    
T  210657 ctcatgttaccttctctagaagaacttgatctttcaggatgtagtattcttgagggtttt 210598  T

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