View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6353_high_24 (Length: 218)
Name: NF6353_high_24
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6353_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 37845951 - 37845765
Alignment:
| Q |
14 |
cagagaaaatattacaagtactacatggttgtagtgttgtattggctacaaatgcatcaccatcttccacctcaccacacctccacttacacatgtcgct |
113 |
Q |
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| T |
37845951 |
cagagaaaatattacaagtactacatggttgtagtgttgtattggctacaaatgcatcaccatcttccacctcaccacacctccacttacacatgtcgct |
37845852 |
T |
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| Q |
114 |
tttatacaagtcaataacatctttcatggtcggtctctttcgcagatctgtcgctgtgcattgcaatgccaataaaaacattgacgt |
200 |
Q |
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| T |
37845851 |
tttatacaagtcaataacatctttcatggtcggtctctttcgcagatctgtcgctgtgcattgcaatgccaataaaaacattgacgt |
37845765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 37844227 - 37844156
Alignment:
| Q |
125 |
caataacatctttcatggtcggtctctttcgcagatctgtcgctgtgcattgcaatgccaataaaaacattg |
196 |
Q |
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| T |
37844227 |
caataacatctttcatgattggtctctttcgtaaatccttctctgtacattgcaatgccaataaaaacattg |
37844156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 37838391 - 37838320
Alignment:
| Q |
115 |
ttatacaagtcaataacatctttcatggtcggtctctttcgcagatctgtcgctgtgcattgcaatgccaat |
186 |
Q |
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| T |
37838391 |
ttataaaagtcaataacatctttcatggtcggcctccttcgtggatccttctctgtgcattgtaatgccaat |
37838320 |
T |
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