View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6353_low_11 (Length: 373)
Name: NF6353_low_11
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6353_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 358
Target Start/End: Original strand, 53808155 - 53808503
Alignment:
| Q |
11 |
caaaggcctaaaacccatcttaaacctattttgcatgcatccaagcatgaataaaagaatttgaattgtcatacatttgtgcacatccttaaaaagagag |
110 |
Q |
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| T |
53808155 |
caaaggcctaaaacccgtcttaaacctattttgcatgcatccaagcatgaataaaagaatttgaattgtcatacatttgtgcacatccttgaaaagagag |
53808254 |
T |
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| Q |
111 |
--tgaaataattcaaagtaaaattatcttactcctaaagggaattgcggtgagaactatcttatttcttgatttattctttatattacataactaatatt |
208 |
Q |
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| T |
53808255 |
agtgaaata-ttcaaagtaaaattatcttactcctaaagggaattgcagtgagaactatcttatttcttgatttattctttatattacataactaatatt |
53808353 |
T |
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| Q |
209 |
gattgttgtcatgccttaaacattgatcctaatgatatttgaatagtatttgtcctcttactctccattcattggtgatggttacaaattgtccgcttat |
308 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| |
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| T |
53808354 |
gatttttgtcatgccttaaacattgatcctaatgatatttgaatagtatttgtcctcttactctccattcattgatgatggttacaaattgtctgtttat |
53808453 |
T |
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| Q |
309 |
cctcgctaaattaaccaaattgtcattttaaagaggttttgattctatta |
358 |
Q |
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| T |
53808454 |
cctcgctaaattgaccaaattgtcattttaaagaggttttgattctatta |
53808503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 41982291 - 41982190
Alignment:
| Q |
217 |
tcatgccttaaacattgatcctaatgatatttgaatagtatttgtcctcttactctccattcattggtgatggttacaaattgtccgcttatcctcgcta |
316 |
Q |
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| T |
41982291 |
tcatgccctaaacattgatcctaatgatatttgaatcgaagtaatgctcttattctccattctttggcggtggttacaaattgtctgtttatgcttgcta |
41982192 |
T |
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| Q |
317 |
aa |
318 |
Q |
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| T |
41982191 |
aa |
41982190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 283
Target Start/End: Complemental strand, 19043389 - 19043262
Alignment:
| Q |
156 |
ggtgagaactatcttatttcttgatttattctttatattacataactaatattgattgttgtcatgccttaaacattgatcctaatgatatttgaatagt |
255 |
Q |
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|||| |||||||| ||||||||||||||||| |||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| |||||||||| |
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| T |
19043389 |
ggtgggaactatcatatttcttgatttattcattatattacataactattattgatctttgtcatgccctaaacattgatcctaatgaaatttgaataga |
19043290 |
T |
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| Q |
256 |
atttgtcctcttactctccattcattgg |
283 |
Q |
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| T |
19043289 |
agtaatcctcttactctccattcattgg |
19043262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 47225973 - 47225897
Alignment:
| Q |
172 |
tttcttgatttattctttatattacataactaatattgattgttgtcatgccttaaacattgatcctaatgatattt |
248 |
Q |
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|||||| ||||||| ||||||||||||| ||||||||||| |||| |||| | ||||||||| |||||||||||| |
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| T |
47225973 |
tttcttcatttattatttatattacatagctaatattgatctctgtcgtgccctcaacattgattctaatgatattt |
47225897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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