View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6353_low_12 (Length: 370)
Name: NF6353_low_12
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6353_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 9e-89; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 178 - 363
Target Start/End: Original strand, 3804895 - 3805080
Alignment:
| Q |
178 |
agagtagaaatgaagtttaaacatccagtcattctctatataaaaagagctttgtatgaactttcagccatagttaaaaatgcctcttaacatagatttg |
277 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3804895 |
agagtagaaatgaagtttaaacatctagtcattctctatataaaaagagctttgtatgaactttcagccatagttaaaaatgcctcttaacatagacttg |
3804994 |
T |
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| Q |
278 |
aatgttcctttcacttttacggatgaacattcaatttctgataatgataccacaataccatcaaatgtagaaacacaataccagaa |
363 |
Q |
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| T |
3804995 |
aatgtttctttcacttttacgcatgaacattcaatttctgataatgataccacaataccatcaaatgtagaaacacagtaccagaa |
3805080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 178 - 355
Target Start/End: Complemental strand, 5165043 - 5164866
Alignment:
| Q |
178 |
agagtagaaatgaagtttaaacatccagtcattctctatataaaaagagctttgtatgaactttcagccatagttaaaaatgcctcttaacatagatttg |
277 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
5165043 |
agagtagaaatgaagtttaaacatcccgtcattctctatataaagagagctttgtatgaactttcagccatacttaaaaatgcctcttaacatagacttg |
5164944 |
T |
|
| Q |
278 |
aatgttcctttcacttttacggatgaacattcaatttctgataatgataccacaataccatcaaatgtagaaacacaa |
355 |
Q |
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| T |
5164943 |
aatgttcctttcacttttacacatgaacattcaatttctgataatgataccacaataccatcaaatgtagaaacacaa |
5164866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 3804717 - 3804829
Alignment:
| Q |
1 |
ccaagcatcacaaacacgtctctccctcttcacaagaatacataggttttattgtggctattgatattctcatttggatttcaaattgaaaaaagtaggc |
100 |
Q |
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| T |
3804717 |
ccaagcctcacaaacacgtctctccctcttcacaagaatacataggttttattgtggctattgatattctcatttggatttcaaattgaaaaaagtaggc |
3804816 |
T |
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| Q |
101 |
aaactcccaccac |
113 |
Q |
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| T |
3804817 |
aaactcccaccac |
3804829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 8435156 - 8435037
Alignment:
| Q |
178 |
agagtagaaatgaagtttaaacatccagtcattctctatataaaaagagctttgtatgaactttcagccatagttaaaaatgcctcttaacatagatttg |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | | ||||||||||| ||| |
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| T |
8435156 |
agagtagaaatgaagtttaaacatccagtcattctctatataaagagagctttgtatgaactttcagccatacttaaaaacgtcccttaacatagacttg |
8435057 |
T |
|
| Q |
278 |
aatgttcctttcacttttac |
297 |
Q |
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|||||||||||||||||||| |
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| T |
8435056 |
aatgttcctttcacttttac |
8435037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 5165153 - 5165109
Alignment:
| Q |
69 |
ctcatttggatttcaaattgaaaaaagtaggcaaactcccaccac |
113 |
Q |
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| T |
5165153 |
ctcatttggatttcaaattgaaaaaagtaggcaaactcccaccac |
5165109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 8435255 - 8435222
Alignment:
| Q |
80 |
ttcaaattgaaaaaagtaggcaaactcccaccac |
113 |
Q |
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| T |
8435255 |
ttcaaattgaaaaaagtaggcaaactcccaccac |
8435222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 27149826 - 27149785
Alignment:
| Q |
2 |
caagcatcacaaacacgtctctccctcttcacaagaatacat |
43 |
Q |
| |
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| T |
27149826 |
caagcctcacaaacacgcctctccctcttcacaagaatacat |
27149785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 178 - 355
Target Start/End: Complemental strand, 31742524 - 31742347
Alignment:
| Q |
178 |
agagtagaaatgaagtttaaacatccagtcattctctatataaaaagagctttgtatgaactttcagccatagttaaaaatgcctcttaacatagatttg |
277 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
31742524 |
agagtagaaatgaagtttaaccatccagtcattctctatataaagagagctttgtatgaactttcagccatacttaaaaatgcctcttaacatagacttg |
31742425 |
T |
|
| Q |
278 |
aatgttcctttcacttttacggatgaacattcaatttctgataatgataccacaataccatcaaatgtagaaacacaa |
355 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31742424 |
aatgttcctttcacttttacacatgaacattcaatttctgataatgatacaacaataccatcaaatgtagaaacacaa |
31742347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 31742718 - 31742590
Alignment:
| Q |
2 |
caagcatcacaaacacgtctctccctcttcacaagaatacataggttttatt----------gtggctattgatattctca-------tttggatttcaa |
84 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
31742718 |
caagcctcacaaacacgcctctccctcttcacaagaatacatcggttttattatggtttaatgtggctattgatattctcacagctcatttggatttcaa |
31742619 |
T |
|
| Q |
85 |
attgaaaaaagtaggcaaactcccaccac |
113 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
31742618 |
attgaaaaaagtaggcaaactcccaccac |
31742590 |
T |
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