View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6353_low_17 (Length: 251)

Name: NF6353_low_17
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6353_low_17
NF6353_low_17
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-243)||(73427-73668)
[»] chr6 (6 HSPs)
chr6 (127-226)||(29673039-29673140)
chr6 (125-226)||(28489671-28489774)
chr6 (125-226)||(29802081-29802184)
chr6 (120-162)||(29757870-29757912)
chr6 (126-162)||(29721844-29721880)
chr6 (193-226)||(29757945-29757978)
[»] chr8 (1 HSPs)
chr8 (125-226)||(12590857-12590960)
[»] scaffold0012 (3 HSPs)
scaffold0012 (125-162)||(211027-211064)
scaffold0012 (126-226)||(237714-237816)
scaffold0012 (193-226)||(211097-211130)
[»] chr3 (1 HSPs)
chr3 (120-161)||(615951-615992)


Alignment Details
Target: scaffold0007 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 73668 - 73427
Alignment:
Q  1 ttcatacaattttgaattgaaaatagatttgtgagaaggcccctccacttccactcatattgatttgctggagagcgaaagcccttccactcaaatcgat 100  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  73668 ttcatacaattttgaattgaaaatagatttatgagaaagcccctccacttccactcatattgatttgctggagagcgaaagcccttccactcaaatcgat 73569  T
Q  101 ttgatgaaagaaaaccgtaattgtgacattccagcactcttagactatttggaagatgtttgtggatttcagaaaaaatcgacatgcctaagaattagtg 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  73568 ttgatgaaagaaaaccgtaattgtgacattccaacactcttagactatttggaagatgtttctggatttcaga-aaaatcgacatgcctaagaattagtg 73470  T
Q  201 ttttgagattttctatcttcttgaaatgtatgattttcatttc 243  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  73469 ttttgagattttccatcttcttgaaatgtatgattttcatttc 73427  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 29673039 - 29673140
Alignment:
Q  127 cattccagcactcttagactatttggaagatgtttgtggatttcag--aaaaaatcgacatgcctaagaattagtgttttgagattttctatcttcttga 224  Q
    ||||||| |||||||||||||||||||||||||||| |  ||||||  |||||| |  |||  |||| ||| ||||||||||||||||| ||||||||||    
T  29673039 cattccaacactcttagactatttggaagatgtttgggattttcagaaaaaaaaacatcattactaaaaatgagtgttttgagattttccatcttcttga 29673138  T
Q  225 aa 226  Q
    ||    
T  29673139 aa 29673140  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 28489671 - 28489774
Alignment:
Q  125 gacattccagcactcttagactatttggaagatgtttgtggatttcagaaa--aaatcgacatgcctaagaattagtgttttgagattttctatcttctt 222  Q
    ||||||||| |||||||||||||||||||||||||||| |  ||| |||||  ||| |  |||  |||| ||| ||||||||||||||||| ||||||||    
T  28489671 gacattccaacactcttagactatttggaagatgtttgggatttttagaaaagaaaacatcattactaaaaatgagtgttttgagattttccatcttctt 28489770  T
Q  223 gaaa 226  Q
    ||||    
T  28489771 gaaa 28489774  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 29802081 - 29802184
Alignment:
Q  125 gacattccagcactcttagactatttggaagatgtttgtggatttcagaaa--aaatcgacatgcctaagaattagtgttttgagattttctatcttctt 222  Q
    ||||||||| |||||||||||||||||||||||||||| |  ||| |||||  ||| |  |||  |||| ||| ||||||||||||||||| ||||||||    
T  29802081 gacattccaacactcttagactatttggaagatgtttgggatttttagaaaagaaaacatcattactaaaaatgagtgttttgagattttccatcttctt 29802180  T
Q  223 gaaa 226  Q
    ||||    
T  29802181 gaaa 29802184  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 29757870 - 29757912
Alignment:
Q  120 attgtgacattccagcactcttagactatttggaagatgtttg 162  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  29757870 attgtgacattccagcactctgagactatttggaagatgtttg 29757912  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 29721844 - 29721880
Alignment:
Q  126 acattccagcactcttagactatttggaagatgtttg 162  Q
    |||||||||||||||||||||||||||||||||||||    
T  29721844 acattccagcactcttagactatttggaagatgtttg 29721880  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 29757945 - 29757978
Alignment:
Q  193 aattagtgttttgagattttctatcttcttgaaa 226  Q
    ||||||||||||||||||||| ||||||||||||    
T  29757945 aattagtgttttgagattttccatcttcttgaaa 29757978  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 12590960 - 12590857
Alignment:
Q  125 gacattccagcactcttagactatttggaagatgtttgtggatttcagaaaa--aatcgacatgcctaagaattagtgttttgagattttctatcttctt 222  Q
    ||||||||| |||||||||||||||||||||||||||| |  ||| ||||||  || |  | |  |||| ||||||||||||||||||||| ||||||||    
T  12590960 gacattccaacactcttagactatttggaagatgtttgggatttttagaaaaagaaacatctttactaaaaattagtgttttgagattttccatcttctt 12590861  T
Q  223 gaaa 226  Q
    ||||    
T  12590860 gaaa 12590857  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 211027 - 211064
Alignment:
Q  125 gacattccagcactcttagactatttggaagatgtttg 162  Q
    ||||||||||||||||||||||||||||||||||||||    
T  211027 gacattccagcactcttagactatttggaagatgtttg 211064  T

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Target: scaffold0012; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 237714 - 237816
Alignment:
Q  126 acattccagcactcttagactatttggaagatgtttgtggatttcagaaaaaatcgacatg---cctaagaattagtgttttgagattttctatcttctt 222  Q
    ||||||||||||||||||||||||||||||| ||||| |  ||| || ||||||| |||||    |||| |||||||||||| |||||||  ||||||||    
T  237714 acattccagcactcttagactatttggaagacgtttgggagttttag-aaaaatccacatgatcactaaaaattagtgttttcagatttttcatcttctt 237812  T
Q  223 gaaa 226  Q
    ||||    
T  237813 gaaa 237816  T

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Target: scaffold0012; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 211097 - 211130
Alignment:
Q  193 aattagtgttttgagattttctatcttcttgaaa 226  Q
    ||||||||||||||||||||| ||||||||||||    
T  211097 aattagtgttttgagattttccatcttcttgaaa 211130  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 615992 - 615951
Alignment:
Q  120 attgtgacattccagcactcttagactatttggaagatgttt 161  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  615992 attgcgacattccaacactcttagactatttggaagatgttt 615951  T

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