View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6353_low_2 (Length: 655)
Name: NF6353_low_2
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6353_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 18 - 648
Target Start/End: Complemental strand, 45344785 - 45344155
Alignment:
| Q |
18 |
acttctacaccaaggaaatatttcatcttccctaaatccgtcatatcaaactcaatcttcattgacttcttaaagctttcaaacatgcatgcatcattcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45344785 |
acttctacaccaaggaaatatttcatcttccctaaatccgtcatatcaaactcaatcttcattgacatcttaaagctttcaaacatgcatgcatcattcc |
45344686 |
T |
|
| Q |
118 |
cagtaaagattaaatcatcaacatacaaactcacaattaaaattcttttacctcctgttttgacaaagagagtatgatcatgattgcatctttcaaatcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45344685 |
cagtaaagattaaatcatcaacatacaaactcacaattaaaattcttttacctcctgttttgacaaagagagtatgatcatgattgcatctttcaaatca |
45344586 |
T |
|
| Q |
218 |
ttccttagcaaaatatgattcaattttactata-ccagctcgcggtgcttgctttaacccatataaagctttcttaagcttgtagaccttttcttcttca |
316 |
Q |
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||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45344585 |
ttccttagcaaaatatgattcaattttactatatcaagctcgtggtgcttgctttaacccatataaagctttcttaagcttgtagaccttttctttttca |
45344486 |
T |
|
| Q |
317 |
ccccttcggacataccccaatggttgttctacatacacgtcctctattaactcaccatgaagaaatgcgcttttgacatcgagttgatacacactccacc |
416 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45344485 |
ccccttcggacataccctaatggatgttctacatacacgtcctctattaacttactatgaagaaatgcgcttttgacatcgagttggtacacactccacc |
45344386 |
T |
|
| Q |
417 |
ccttttgtgctgctaaagctaaaatcatccggattgtgtcccaccttgctaccggagcaaatacttcgttataatcaatcctttgttgctgagcataacc |
516 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||| || |
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| T |
45344385 |
ccttttgtgctgctaaagctaaaaccatccggattgtgtcccaccttgctaccggagcaaagacttcgttataatcaa-cccttgttgctgagcatagcc |
45344287 |
T |
|
| Q |
517 |
tttagctactaacctggctttgaacttatcaacctcgccgttctcatttaatttggttctaaagacccatttcacaccaatcttcttagcaccttcaggt |
616 |
Q |
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||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45344286 |
tttagctaccaaccgggctttgaacttatcaacctcgccattctcatttaatttggttctaaagacccatttcacaccaatcttcttagcaccttcaggt |
45344187 |
T |
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| Q |
617 |
aaagttgtaagctgccatgttttattcttttc |
648 |
Q |
| |
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||| ||||||||||||| |||||||||||||| |
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| T |
45344186 |
aaatttgtaagctgccaagttttattcttttc |
45344155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 10781926 - 10781979
Alignment:
| Q |
236 |
ttcaattttactatacca-gctcgcggtgcttgctttaacccatataaagcttt |
288 |
Q |
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|||||||||||||||||| |||| || ||||||||||| |||||||||||||| |
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| T |
10781926 |
ttcaattttactataccaagctcttggagcttgctttaaaccatataaagcttt |
10781979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 14247089 - 14246963
Alignment:
| Q |
16 |
tcacttctacaccaaggaaatatttcatcttccctaaatccgtcatatcaaactcaatcttcattgacttcttaaagctttcaaacatgcatgcatcatt |
115 |
Q |
| |
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|||||||||| ||||| |||| ||||| ||||| ||||| | |||||||||||| | | ||||||| || ||||| ||| |||||| | |||||| |
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| T |
14247089 |
tcacttctactccaagaaaatgcttcattttccccaaatcggacatatcaaactccaacatcattgagtttttaaactcatcacacatgcttctatcatt |
14246990 |
T |
|
| Q |
116 |
cccagtaaagattaaatcatcaacata |
142 |
Q |
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||| ||||| ||||||||||||||||| |
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| T |
14246989 |
cccggtaaaaattaaatcatcaacata |
14246963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 1154906 - 1154953
Alignment:
| Q |
109 |
catcattcccagtaaagattaaatcatcaacatacaaactcacaatta |
156 |
Q |
| |
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||||||| |||||||| || |||||||||||||||||||| ||||||| |
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| T |
1154906 |
catcattgccagtaaatatcaaatcatcaacatacaaacttacaatta |
1154953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 3013322 - 3013390
Alignment:
| Q |
505 |
ctgagcataacctttagctactaacctggctttgaacttatcaacctcgccgttctcatttaatttggt |
573 |
Q |
| |
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||||||||| || ||||||||||| || |||||| | || |||||||| || |||||||| |||||||| |
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| T |
3013322 |
ctgagcatatcccttagctactaatctagctttgtatttctcaacctctcctttctcattcaatttggt |
3013390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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