View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6353_low_23 (Length: 236)
Name: NF6353_low_23
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6353_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49351528 - 49351307
Alignment:
| Q |
1 |
ccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacagnnnnnnngatttcttgaagatccttg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49351528 |
ccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacagtttttttgatttcttgaagatccttg |
49351429 |
T |
|
| Q |
101 |
tagacgccgagggatagagaagcttcttgaacagcaacggatgcaagttttccaatgaatgactctgccacgccaaagaggagtgattctgccatgttga |
200 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49351428 |
tagacgctgagggatagagaagcttcttgaacagcaacggatgcaagttttccaatgaatgactctgccacgccaaagaggagtgattctgccatgttga |
49351329 |
T |
|
| Q |
201 |
ttggttttggaggataaggtgg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
49351328 |
ttggttttggaggataaggtgg |
49351307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 49340164 - 49339952
Alignment:
| Q |
1 |
ccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacagnnnnnnngatttcttgaagatccttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||| ||||||| |||||| | |
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| T |
49340164 |
ccattcacgtagctcattgttctgccattgcttttgttcagcatctaataacacggctttgacgagtgagacaatgttttttatttcttaaagatcgtca |
49340065 |
T |
|
| Q |
101 |
tagac-----gccgagggatagagaagcttcttgaacagcaacggatgcaagttttccaatgaatgactctgccacgccaaagaggagtgattctgccat |
195 |
Q |
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| T |
49340064 |
tagacacccagcccagcgctagagaagcttcattgacagcaacagaagcaagcttactaatgaatgactctgcaactccgaagagtagtgattccgccat |
49339965 |
T |
|
| Q |
196 |
gttgattggtttt |
208 |
Q |
| |
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||||||| ||||| |
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| T |
49339964 |
gttgatttgtttt |
49339952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 32784747 - 32784957
Alignment:
| Q |
1 |
ccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacagnnnnnnngatttcttgaagatccttg |
100 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | | |
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| T |
32784747 |
ccattcacgcagctcatggttctgccattgcgtttgttcagcgtccaacaacacggctttgatgagtgagacagtgtttttgatttcttgaagattgtcg |
32784846 |
T |
|
| Q |
101 |
tagacgccgagggatagagaagcttcttgaacagcaacggatgcaagttttccaatgaatgactctgccacgccaaagaggagtgattctgccatgttga |
200 |
Q |
| |
|
||||| ||||| | ||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
32784847 |
tagacaccgagcgttagagaagctttttcaacagcaacggatgcaagtttttcaatgaatgactctgccacgccaaagaggagtgattctgccattttgt |
32784946 |
T |
|
| Q |
201 |
ttggttttgga |
211 |
Q |
| |
|
||||||||||| |
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|
| T |
32784947 |
ttggttttgga |
32784957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 13441575 - 13441785
Alignment:
| Q |
1 |
ccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacagnnnnnnngatttcttgaagatccttg |
100 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| |||||||||||| | | | |
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| T |
13441575 |
ccattcacctagttcattgttctgccattgcctttgttcagcgtccaacaacactgctttgacgagtgagacagtgttttttatttcttgaagaacgtcg |
13441674 |
T |
|
| Q |
101 |
tagacgccgagggatagagaagcttcttgaacagcaacggatgcaagttttccaatgaatgactctgccacgccaaagaggagtgattctgccatgttga |
200 |
Q |
| |
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||||| || | | ||||||||||| | |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13441675 |
tagacaccaaacgctagagaagctttatcaacagcaatggatgcaagtttttcaatgaatgactctgccgcgccaaagaggagtgattctgccatgttga |
13441774 |
T |
|
| Q |
201 |
ttggttttgga |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
13441775 |
ttggttttgga |
13441785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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