View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6353_low_24 (Length: 230)
Name: NF6353_low_24
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6353_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3164273 - 3164499
Alignment:
| Q |
1 |
attgcaaaacttcaggcttagtctcgctaccatcggcagatgccgctggaatctgtg---catgagaccattttgtcctcgttttgcgagtgaaacttct |
97 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3164273 |
attgcaaaacttcaggcttagtctcgctatcatcggcagatgccgctggaatctgtgattcatgagaccattttgtcctcgttttgcgagtgaaacttct |
3164372 |
T |
|
| Q |
98 |
ggcagataggccatcctttgatgtctctttagtgcaagatttaactctctccaatttctgggaaggtgcatgtgatacgagactttctaaggcgttttca |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3164373 |
ggcagataggccatcctttgatgtctctttagtgcaagatttaactctctccaatttctgggaaggtgcatgtgatacgagactttctaatccgttttca |
3164472 |
T |
|
| Q |
198 |
caatcatgttttttctcgttcatctca |
224 |
Q |
| |
|
||||||||||||||||||||| ||||| |
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|
| T |
3164473 |
caatcatgttttttctcgttcttctca |
3164499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3164549 - 3164775
Alignment:
| Q |
1 |
attgcaaaacttcaggcttagtctcgctaccatcggcagatgccgctggaatctgtg---catgagaccattttgtcctcgttttgcgagtgaaacttct |
97 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||| ||||||| ||| | || ||||||| ||||||||||||| | |||||||||||| |
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| T |
3164549 |
attgcaaaacttcaggcttagtctcattatcatcggcagatgctgctggaacctgggattcaggagaccagtttgtcctcgtttcgtgagtgaaacttcc |
3164648 |
T |
|
| Q |
98 |
ggcagataggccatcctttgatgtctctttagtgcaagatttaactctctccaatttctgggaaggtgcatgtgatacgagactttctaaggcgttttca |
197 |
Q |
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| ||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| | | |||||| |
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| T |
3164649 |
agtagacaggccatcctttgatgtttctttagtggaagatttaactctctccaatttctgggaaggtacatgtgatacaggactttctatgccattttca |
3164748 |
T |
|
| Q |
198 |
caatcatgttttttctcgttcatctca |
224 |
Q |
| |
|
||||||||||||||||||||| ||||| |
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|
| T |
3164749 |
caatcatgttttttctcgttcttctca |
3164775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 3164826 - 3165051
Alignment:
| Q |
2 |
ttgcaaaacttcaggcttagtctcgctaccatcggcagatgccgctggaatctgtg---catgagaccattttgtcctcgttttgcgagtgaaacttctg |
98 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||||||||||||||| || ||| | || ||||||| ||||| ||||||| | |||||||||||| | |
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| T |
3164826 |
ttgcaaaacttcaagcttagtctcgttattatcggcagatgccgctgaaacctgggattcaggagaccagtttgttctcgtttcgtgagtgaaacttccg |
3164925 |
T |
|
| Q |
99 |
gcagataggccatcctttgatgtctctttagtgcaagatttaactctctccaatttctgggaaggtgcatgtgatacgagactttctaaggcgttttcac |
198 |
Q |
| |
|
||||||||||||||||||||||| || || ||| ||||||||||||||||||||||||| ||||| ||||||| | ||||||||||| | ||||||| |
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|
| T |
3164926 |
gcagataggccatcctttgatgtttccttggtggaagatttaactctctccaatttctgcaaaggtaaatgtgatgctggactttctaagccattttcac |
3165025 |
T |
|
| Q |
199 |
aatcatgttttttctcgttcatctca |
224 |
Q |
| |
|
|||||| ||||| ||||||| ||||| |
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|
| T |
3165026 |
aatcatctttttcctcgttcttctca |
3165051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3163997 - 3164222
Alignment:
| Q |
1 |
attgcaaaacttcaggcttagtctcgctaccatcggcagatgccgctggaatctgtg---catgagaccattttgtcctcgttttgcgagtgaaacttct |
97 |
Q |
| |
|
|||||||||||||||||||||||| | || |||| ||||| || ||||||| ||| | || | ||||| ||||||||||||| | | |||||||||| |
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|
| T |
3163997 |
attgcaaaacttcaggcttagtcttgttatcatcagcagacgcagctggaacctgggtttcaggggaccaatttgtcctcgtttcgtgtgtgaaacttcc |
3164096 |
T |
|
| Q |
98 |
ggcagataggccatcctttgatgtctctttagtgcaagatttaactctctccaatttctgggaaggtgcatgtgatacgagactttctaaggcgttttca |
197 |
Q |
| |
|
|| ||||||||||||||||||||| |||||| || ||| |||||| ||||||||||||||||| ||| ||||||||| ||||||||||| | |||||| |
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|
| T |
3164097 |
ggaagataggccatcctttgatgtttctttaatggaagttttaacgctctccaatttctgggatggtaaatgtgatactggactttctaagccattttca |
3164196 |
T |
|
| Q |
198 |
caatcatgttttttctcgttcatctc |
223 |
Q |
| |
|
||||||| ||||||||| ||| |||| |
|
|
| T |
3164197 |
caatcatcttttttctcattcttctc |
3164222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 3163727 - 3163947
Alignment:
| Q |
7 |
aaacttcaggcttagtctcgctaccatcggcagatgccgctggaatctgtg---catgagaccattttgtcctcgttttgcgagtgaaacttctggcaga |
103 |
Q |
| |
|
|||||||||||||||| || || |||||| |||||| ||||||| ||| | || ||||||| |||||||| |||| | |||||||| | | |||| |
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| T |
3163727 |
aaacttcaggcttagtttcattatcatcggaagatgcagctggaacctgggattcaggagaccagtttgtccttgtttcttgtgtgaaactcccgacaga |
3163826 |
T |
|
| Q |
104 |
taggccatcctttgatgtctctttagtgcaagatttaactctctccaatttctgggaaggtgcatgtgatacgagactttctaaggcgttttcacaatca |
203 |
Q |
| |
|
|| || ||||||||||||||||||| | |||||| ||||||| ||||||||| || ||| ||||||||| ||||||||||| | |||| ||||||| |
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| T |
3163827 |
taatccttcctttgatgtctctttagcggaagattcaactctcatcaatttctgagatggtaaatgtgatactggactttctaagccattttgacaatca |
3163926 |
T |
|
| Q |
204 |
tgttttttctcgttcatctca |
224 |
Q |
| |
|
| |||||| || ||| ||||| |
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| T |
3163927 |
tcttttttttccttcttctca |
3163947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 22844135 - 22844297
Alignment:
| Q |
64 |
accattttgtcctcgttttgcgagtgaaacttctggcagataggccatcctttgatgtctctttagt--gcaagatttaactctctccaatttctgggaa |
161 |
Q |
| |
|
|||| ||| ||||||||| | |||| ||||||| |||||||||||||||||||||||| || || || | ||| |||||||||||||||||| || ||| |
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|
| T |
22844135 |
accagtttatcctcgtttcgtgagtaaaacttccggcagataggccatcctttgatgtttccttggtggggaaggtttaactctctccaatttttgcgaa |
22844234 |
T |
|
| Q |
162 |
ggtgcatgtgatacgagactttctaaggcgttttcacaatcatgttttttctcgttcatctca |
224 |
Q |
| |
|
||| ||||||| |||||| |||| | ||||||||||||| ||||| ||| ||| ||||| |
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|
| T |
22844235 |
ggtaaatgtgatgttggactttttaagccattttcacaatcatctttttcctcattcttctca |
22844297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 35867526 - 35867452
Alignment:
| Q |
99 |
gcagataggccatcctttgatgtctctttagtgcaagatttaactctctccaatttctgggaaggtgcatgtgat |
173 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||| ||||| |||||||| |
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|
| T |
35867526 |
gcagataacccatcctttgacgtctctttagttgaagattcaactctctccaatttctgtgaagggacatgtgat |
35867452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 35867253 - 35867189
Alignment:
| Q |
99 |
gcagataggccatcctttgatgtctctttagtgcaagatttaactctctccaatttctgggaagg |
163 |
Q |
| |
|
|||||||| ||||||||||| ||||||| || |||||| |||||||||||||||||| ||||| |
|
|
| T |
35867253 |
gcagatagcccatcctttgacaactctttactggaagattcaactctctccaatttctgtgaagg |
35867189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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