View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6353_low_26 (Length: 219)
Name: NF6353_low_26
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6353_low_26 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 3165076 - 3164877
Alignment:
| Q |
20 |
aatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgtgaaaatggcttagaaagtccagcatcacatttacctttgcagaattt |
119 |
Q |
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|||||||| |||| | |||| |||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3165076 |
aatcaaagattgaagacctcgaggctgagaagaacgaggaaaaagatgattgtgaaaatggcttagaaagtccagcatcacatttacctttgcagaaatt |
3164977 |
T |
|
| Q |
120 |
ggagagagttaaatcttccaccaaggaaacatcaaaggatggcctatccgccggaagtttcactcacgaaacgagaacaaactggtctcctgaatcccag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3164976 |
ggagagagttaaatcttccaccaaggaaacatcaaaggatggcctatctgccggaagtttcactcacgaaacgagaacaaactggtctcctgaatcccag |
3164877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 3164267 - 3164049
Alignment:
| Q |
1 |
gagcaggctaaagtttcgcaatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgtgaaaatggcttagaaagtccagcatcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3164267 |
gagcaggctaaagtttcgcaatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgtgaaaatggcttagaaagtccagtatcac |
3164168 |
T |
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| Q |
101 |
atttacctttgcagaatttggagagagttaaatcttccaccaaggaaacatcaaaggatggcctatccgccggaagtttcactcacgaaacgagaacaaa |
200 |
Q |
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||||||| | ||||| |||||||| |||||| |||||| || ||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| |
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| T |
3164167 |
atttaccatcccagaaattggagagcgttaaaacttccattaaagaaacatcaaaggatggcctatcttccggaagtttcacacacgaaacgaggacaaa |
3164068 |
T |
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| Q |
201 |
ctggtctcctgaatcccag |
219 |
Q |
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||||| |||||| ||||| |
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| T |
3164067 |
ttggtcccctgaaacccag |
3164049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 3164819 - 3164601
Alignment:
| Q |
1 |
gagcaggctaaagtttcgcaatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgtgaaaatggcttagaaagtccagcatcac |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||| ||||||||||||||||| |||||||||| | ||||| |
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| T |
3164819 |
gagcaggctaaagtttcgcaatcaaagcttgaagtcctcgaggctgagaagaacgagaaaaaacatgattgtgaaaatggcatagaaagtcctgtatcac |
3164720 |
T |
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| Q |
101 |
atttacctttgcagaatttggagagagttaaatcttccaccaaggaaacatcaaaggatggcctatccgccggaagtttcactcacgaaacgagaacaaa |
200 |
Q |
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|| |||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||| || | ||||||||||||||||||||||| ||||| |
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| T |
3164719 |
atgtaccttcccagaaattggagagagttaaatcttccactaaagaaacatcaaaggatggcctgtctactggaagtttcactcacgaaacgaggacaaa |
3164620 |
T |
|
| Q |
201 |
ctggtctcctgaatcccag |
219 |
Q |
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||||||||||||||||||| |
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| T |
3164619 |
ctggtctcctgaatcccag |
3164601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 22844322 - 22844121
Alignment:
| Q |
20 |
aatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgtgaaaatggcttagaaagtccagcatcacatttacctttgcagaattt |
119 |
Q |
| |
|
|||||||| |||| | ||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| || || |
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| T |
22844322 |
aatcaaagattgaagacctcaaggctgagaagaatgaggaaaaagatgattgtgaaaatggcttaaaaagtccaacatcacatttaccttcgcaaaaatt |
22844223 |
T |
|
| Q |
120 |
ggagagagttaaatctt--ccaccaaggaaacatcaaaggatggcctatccgccggaagtttcactcacgaaacgagaacaaactggtctcctgaatccc |
217 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||| ||||||||||| |
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| T |
22844222 |
ggagagagttaaaccttccccaccaaggaaacatcaaaggatggcctatctgccggaagttttactcacgaaacgaggataaactggtgtcctgaatccc |
22844123 |
T |
|
| Q |
218 |
ag |
219 |
Q |
| |
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|| |
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|
| T |
22844122 |
ag |
22844121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3164543 - 3164329
Alignment:
| Q |
1 |
gagcaggctaaagtttcgcaatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgtgaaaatggcttagaaagtccagcatcac |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||| ||||| |||| |||||||| ||||||||| ||||||||||||| || |||||||||| | ||||| |
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| T |
3164543 |
gagcaggctaaagttccgcaatcaaagcttgaaatcctcgaggctgagaagaacgagaaaaaacatgattgtgaaaacggattagaaagtctcgtatcac |
3164444 |
T |
|
| Q |
101 |
atttacctttgcagaatttggagagagttaaatcttccaccaaggaaacatcaaaggatggcctatccgccggaagtttcactcacgaaacgagaacaaa |
200 |
Q |
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|| ||||| ||||| ||||||||||||||||||| ||| || || |||||||||||||||||||| ||| |||||||||||| | ||||||| ||||| |
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| T |
3164443 |
atgcaccttcccagaaattggagagagttaaatcttgcactaaagagacatcaaaggatggcctatctgccagaagtttcactcgcaaaacgaggacaaa |
3164344 |
T |
|
| Q |
201 |
ctggtctcctgaatc |
215 |
Q |
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||||||| |||||| |
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| T |
3164343 |
atggtctcatgaatc |
3164329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 3163991 - 3163773
Alignment:
| Q |
1 |
gagcaggctaaagtttcgcaatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgtgaaaatggcttagaaagtccagcatcac |
100 |
Q |
| |
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||||||| |||||||||| |||||||||||| |||||||||| |||||||| || ||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
3163991 |
gagcaggataaagtttcgggatcaaagcttgaagtcctcaaggatgagaagaaggaaaaaaaagatgattgtcaaaatggcttagaaagtccagtatcac |
3163892 |
T |
|
| Q |
101 |
atttacctttgcagaatttggagagagttaaatcttccaccaaggaaacatcaaaggatggcctatccgccggaagtttcactcacgaaacgagaacaaa |
200 |
Q |
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||||||| | ||||| ||| ||||||| |||||||| | || || ||||||||||| || |||| | ||| |||||||| || ||||| || ||||| |
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| T |
3163891 |
atttaccatctcagaaattgatgagagttgaatcttccgctaaagagacatcaaaggaaggattatctgtcgggagtttcacacaagaaacaaggacaaa |
3163792 |
T |
|
| Q |
201 |
ctggtctcctgaatcccag |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
3163791 |
ctggtctcctgaatcccag |
3163773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 35867097 - 35867149
Alignment:
| Q |
20 |
aatcaaagcttgaggtcctcaaggccgagaagaatgagaaaaaagatgattgt |
72 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||| |||||||||| |
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| T |
35867097 |
aatcaaagcttgaattcctcaaggccgacaagaatgagaaaagagatgattgt |
35867149 |
T |
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