View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6353_low_3 (Length: 467)
Name: NF6353_low_3
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6353_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 3 - 457
Target Start/End: Original strand, 5273759 - 5274213
Alignment:
| Q |
3 |
acactttcctcattcatctcaatctcgaactttgacaccttaaccaacccggttcaaacacaagccggtgatgacgccaaaaggctacaacttaatgtaa |
102 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273759 |
acactttcctcattcatctcaatctcgaacttcgacaccttaaccaacccggttcaaacacaagccggtgatgacgccaaaaggctacaacttaatgtaa |
5273858 |
T |
|
| Q |
103 |
caacttctggcggtagccatgtcagcatgacaactggcacggttaacgcaaccgttactggaacagtttacacagacaacaaactagctatatatcaggt |
202 |
Q |
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| T |
5273859 |
ccacttctggcggtagccatgtcagcatgacaactggcacggttaatgcaaccgttactggaacagtttacacagacaacaaactagctatatatcaggt |
5273958 |
T |
|
| Q |
203 |
tgacaaggttcttgttcctcttgatcttgtgcttccagctaaagctcctgcacctgcaccagtttctaaaggagattcagctaagcctgatgatagaagc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5273959 |
tgacaaggttcttgttcctcttgatcttgtgcttcctgctaaagctcctgcacctgcaccggtttctaaaggagattcagctaagcctgatgatagaagc |
5274058 |
T |
|
| Q |
303 |
aagtcatcatcagcaaaggatgacgatgatgagaataatgacttgcctgcagaagcttctggtgctggttattctaatgtggatggaatgtggctggctc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5274059 |
aagtcatcatcagcaaaggatgacgatgatgagaataatgacttgcctgcagaagcttctggtgctggttattcaaatgtggatggaatgtggctggctc |
5274158 |
T |
|
| Q |
403 |
ttgtttttgggatggttttgcttgctggtgaagcaatgctatgaatttgatgatt |
457 |
Q |
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| T |
5274159 |
ttgtttttgggatggttttgcttgctggtgaagcaatgctatgaatttgatgatt |
5274213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 36151278 - 36151495
Alignment:
| Q |
30 |
aactttgacaccttaaccaacccggttcaaacacaagccggtgatgacgccaaaaggctacaacttaatgtaacaacttctggcggtagccatgtcagca |
129 |
Q |
| |
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||||| || |||||||||||||| ||||||||||||||||||||||| || | |||| ||||| || || || |||| ||| || || || || || | |
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| T |
36151278 |
aacttcgataccttaaccaaccctgttcaaacacaagccggtgatgatgcta---ggcttcaactgaacgtcactacttatggtggcagtcaagttagta |
36151374 |
T |
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| Q |
130 |
tgacaactggcacggttaacgcaaccgttactggaacagtttacacagacaacaaactagctatatatcaggttgacaaggttcttgttcctcttgatct |
229 |
Q |
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|| | || || | || || || |||||||| || || ||||| || |||| |||||| ||||| ||||||||||| ||||| ||| | ||||||||||| |
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| T |
36151375 |
tggctaccggagcagtcaatgctaccgttaccggtactgtttataccgacagcaaacttgctatttatcaggttgataaggtacttatgcctcttgatct |
36151474 |
T |
|
| Q |
230 |
tgtgcttccagctaaagctcc |
250 |
Q |
| |
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||| ||||| ||||| ||||| |
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| T |
36151475 |
tgttcttccggctaaggctcc |
36151495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 36154664 - 36154881
Alignment:
| Q |
30 |
aactttgacaccttaaccaacccggttcaaacacaagccggtgatgacgccaaaaggctacaacttaatgtaacaacttctggcggtagccatgtcagca |
129 |
Q |
| |
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||||| || |||||||||||||| ||||||||||||||||||||||| || | |||| ||||| || || || |||| ||| || || || || || | |
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| T |
36154664 |
aacttcgataccttaaccaaccctgttcaaacacaagccggtgatgatgcta---ggcttcaactgaacgtcactacttatggtggcagtcaagttagta |
36154760 |
T |
|
| Q |
130 |
tgacaactggcacggttaacgcaaccgttactggaacagtttacacagacaacaaactagctatatatcaggttgacaaggttcttgttcctcttgatct |
229 |
Q |
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|| | || || | || || || |||||||| || || ||||| || |||| |||||| ||||| ||||||||||| ||||| ||| | ||||||||||| |
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| T |
36154761 |
tggctaccggagcagtcaatgctaccgttaccggtactgtttataccgacagcaaacttgctatttatcaggttgataaggtacttatgcctcttgatct |
36154860 |
T |
|
| Q |
230 |
tgtgcttccagctaaagctcc |
250 |
Q |
| |
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||| ||||| ||||| ||||| |
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| T |
36154861 |
tgttcttccggctaaggctcc |
36154881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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