View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6353_low_6 (Length: 439)
Name: NF6353_low_6
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6353_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Original strand, 30715281 - 30715686
Alignment:
| Q |
14 |
acatcatcatagaattccaaaacaaaagttatcagaagaatacaaagacgaggacaacgataataatagtactgatgcaaacgatgtggattctaaatct |
113 |
Q |
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| T |
30715281 |
acatcataatagaattccaaaacaaaagttatcagaagaatacaaagacgaggacaacgataataatagtactgatgcagacgatgtggattctgaatct |
30715380 |
T |
|
| Q |
114 |
caagaggatcaacaccgacaatttgaagatgaaaccgaaaaagaggaagaagacaatgatgacgatgacgatgatgtttctgaatccttgtccaatgcac |
213 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30715381 |
caagaggatcaacaccgacagtttgaagatgaaaccgaagaagaggaagaagacaatgatgacgatgacgatgatgtttctgaatccttgtccaatgcac |
30715480 |
T |
|
| Q |
214 |
cacatggtaaaccatctttctcacaagaagcacacattggcaatgttccagaaagcccttcagtttcttcttataatgtcccaaatcccacacaacccat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30715481 |
cacatggtaaaccatctttctcacaagaagcacacattggcaatgttccagaaagcccttcagtttcttcttataatgtccgaaatcccacacaacccat |
30715580 |
T |
|
| Q |
314 |
gaatgcatcttcatacataccaatcgctcctttaccaatttttcatggcactccaaacgaatccccaataacccatttgagtcgtttcaacaaagtatgt |
413 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30715581 |
gaatgcatcttcatacatacaaatcgctcctttaccaatttttcgtggcactccaaacgaatccccaataacccatttgagtcgtttcaacaaagtatgt |
30715680 |
T |
|
| Q |
414 |
agagca |
419 |
Q |
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|||||| |
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| T |
30715681 |
agagca |
30715686 |
T |
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