View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6353_low_8 (Length: 426)

Name: NF6353_low_8
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6353_low_8
NF6353_low_8
[»] chr3 (21 HSPs)
chr3 (14-408)||(2806672-2807063)
chr3 (77-408)||(2789829-2790160)
chr3 (77-354)||(2748469-2748746)
chr3 (66-354)||(2856200-2856488)
chr3 (83-344)||(2768546-2768807)
chr3 (79-354)||(2838990-2839265)
chr3 (66-354)||(2796821-2797109)
chr3 (84-339)||(2818035-2818290)
chr3 (82-354)||(5412385-5412655)
chr3 (83-354)||(2758691-2758962)
chr3 (177-249)||(22104265-22104337)
chr3 (176-255)||(22621766-22621845)
chr3 (267-344)||(2755705-2755782)
chr3 (153-249)||(21936671-21936767)
chr3 (177-249)||(30990130-30990202)
chr3 (192-249)||(21945190-21945247)
chr3 (192-249)||(22178974-22179031)
chr3 (164-255)||(3280736-3280827)
chr3 (185-235)||(3200526-3200576)
chr3 (186-232)||(3311133-3311179)
chr3 (186-232)||(3322732-3322778)
[»] scaffold0691 (1 HSPs)
scaffold0691 (89-354)||(6542-6807)
[»] chr1 (3 HSPs)
chr1 (159-261)||(34975035-34975137)
chr1 (145-261)||(34979679-34979795)
chr1 (144-261)||(34988735-34988852)


Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 2806672 - 2807063
Alignment:
Q  14 tactgagaggaaaaggacagtactagattgatagacacatgattccaatagtctagcagtataagatgagagtgaaatggcagaaactgcagtattattt 113  Q
    |||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2806672 tactgagaggaaaaagacagtactagattgatagacacat---tccaatagtctagcagtatcagatgagagtgaaatggcagaaactgcagtattattt 2806768  T
Q  114 gcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctgaaaggtgtacacgcagaattttcagacatcaaagatgaacttgagagcattc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2806769 gcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctaaaaggtgtacacacagaattttcagacatcaaagatgaacttgagagcattc 2806868  T
Q  214 aagtcttcctcaaagatgcagatagaagagcagcagatgaagtagacacaaacgatggaattagaacttgggtaaagcagctgcgcgaagcatcatttca 313  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  2806869 aagtcttcctcaaagatgcagatagaagagcagcagatgaagcagacacaaatgatggaattagaacttgggtaaagcagctgcgcgaagcatcatttcg 2806968  T
Q  314 cattgaagatatcatcgatgaataccatcggctgatgcatatggcaaaatccagtcctcctggatgcggtggatcttcattctacaagattgcaa 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2806969 cattgaagatatcatcgatgaataccatcggctgatgcatatggcaaaatccagtcctcctggatgcggtggatcttcattctacaagattgcaa 2807063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 77 - 408
Target Start/End: Original strand, 2789829 - 2790160
Alignment:
Q  77 agatgagagtgaaatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctgaaaggtgtacacgca 176  Q
    |||||||| ||||||||||||||||||||||||||||| ||| |  ||||||||   |||||||||||||||||||||||| ||||  ||||| |||  |    
T  2789829 agatgagactgaaatggcagaaactgcagtattatttgtcctgggggaagtgttggaattcctaaaagaagaaacaaatctcctgagtggtgtgcacaaa 2789928  T
Q  177 gaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaagtagacacaaacgatggaatta 276  Q
    || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| || |||||||| |    
T  2789929 gattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagacaccaatgatggaataa 2790028  T
Q  277 gaacttgggtaaagcagctgcgcgaagcatcatttcacattgaagatatcatcgatgaataccatcggctgatgcatatggcaaaatccagtcctcctgg 376  Q
    |||||||||| ||||||||| | ||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||| ||||    
T  2790029 gaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctgg 2790128  T
Q  377 atgcggtggatcttcattctacaagattgcaa 408  Q
    |||| ||  ||||| ||||| |||||||||||    
T  2790129 atgccgtcaatctttattctgcaagattgcaa 2790160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 77 - 354
Target Start/End: Original strand, 2748469 - 2748746
Alignment:
Q  77 agatgagagtgaaatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctgaaaggtgtacacgca 176  Q
    ||||||||||||||||||||||||||||||||  |||| ||| |  ||||||||||  |||||||||||||||||||||||||||| | ||||||||  |    
T  2748469 agatgagagtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacaga 2748568  T
Q  177 gaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaagtagacacaaacgatggaatta 276  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||| |||||| ||||||||||| |    
T  2748569 gatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatggaataa 2748668  T
Q  277 gaacttgggtaaagcagctgcgcgaagcatcatttcacattgaagatatcatcgatgaataccatcggctgatgcata 354  Q
    |||||||||| ||||||||| | ||||||||||||| |||||||||| |||| |||||||||| |||||| |||||||    
T  2748669 gaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcata 2748746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 66 - 354
Target Start/End: Complemental strand, 2856488 - 2856200
Alignment:
Q  66 ctagcagtataagatgagagtgaaatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctgaaag 165  Q
    |||||| ||| | |||||||| |||||||||||||||||||||| |||||||| |  ||||||||||  |||||||||||||||||||||||| ||| ||    
T  2856488 ctagcaatatgatatgagagttaaatggcagaaactgcagtattgtttgccctgggggaagtgttccagttcctaaaagaagaaacaaatcttttgagag 2856389  T
Q  166 gtgtacacgcagaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaagtagacacaaa 265  Q
    ||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || || ||||||| |||||  ||    
T  2856388 gtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacataagggctgcggatgaagcagacatcaa 2856289  T
Q  266 cgatggaattagaacttgggtaaagcagctgcgcgaagcatcatttcacattgaagatatcatcgatgaataccatcggctgatgcata 354  Q
     |||||||| ||||||||||| ||||||||| | ||||||||||||| |||||||||| |||| |||||||||| |||| |||| ||||    
T  2856288 tgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgatacata 2856200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 83 - 344
Target Start/End: Original strand, 2768546 - 2768807
Alignment:
Q  83 gagtgaaatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctgaaaggtgtacacgcagaattt 182  Q
    |||| |||||||||||||||| ||||||||||| ||||   |||| |||| |||||||||||||||||||||||| ||||  |||||||||  ||| |||    
T  2768546 gagtaaaatggcagaaactgctgtattatttgctcttgggcaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtacacagagatttt 2768645  T
Q  183 tcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaagtagacacaaacgatggaattagaactt 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||| |||||| ||||||||||| |||||||    
T  2768646 tcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacaccaacgatggaataagaactt 2768745  T
Q  283 gggtaaagcagctgcgcgaagcatcatttcacattgaagatatcatcgatgaataccatcgg 344  Q
    |||| ||||||||| | ||||||||||||| |||||||||| |||| |||||||||| ||||    
T  2768746 gggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgg 2768807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 79 - 354
Target Start/End: Complemental strand, 2839265 - 2838990
Alignment:
Q  79 atgagagtgaaatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctgaaaggtgtacacgcaga 178  Q
    |||||||| |||||||||| ||||||||||| |||||||| |  |||||||||  ||||||||||||||||||||||||||||| ||||||||||  |||    
T  2839265 atgagagttaaatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcctaaaagaagaaacaaatcttctgagaggtgtacacagaga 2839166  T
Q  179 attttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaagtagacacaaacgatggaattaga 278  Q
     |||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| || || ||||||| |||||  ||||||||||| |||    
T  2839165 tttttcagatatcaaagatgaacttgagatcattctagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacatcaacgatggaataaga 2839066  T
Q  279 acttgggtaaagcagctgcgcgaagcatcatttcacattgaagatatcatcgatgaataccatcggctgatgcata 354  Q
    |||||||| ||||||||| | ||||||||||||| |||||||||| |||| |||||||||| ||| || |||||||    
T  2839065 acttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgactaatgcata 2838990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 66 - 354
Target Start/End: Original strand, 2796821 - 2797109
Alignment:
Q  66 ctagcagtataagatgagagtgaaatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctgaaag 165  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||||||||||| |   |||||||   |||||||||||||||||||||||| ||||       
T  2796821 ctagcaatatgagatgagagtgaaatggcagaaacttcagtattatttgccctggggaaagtgtttgaattcctaaaagaagaaacaaatctgctgagtc 2796920  T
Q  166 gtgtacacgcagaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaagtagacacaaa 265  Q
    |||| |||  ||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||   ||||| ||    
T  2796921 gtgtgcacaaagatttttcagacatcacagatgaacttgagagcattcaagttttcctcaaagatgcagatacaagagctgcagatgaaaccgacaccaa 2797020  T
Q  266 cgatggaattagaacttgggtaaagcagctgcgcgaagcatcatttcacattgaagatatcatcgatgaataccatcggctgatgcata 354  Q
     |||||||| ||||||||||| ||||| ||| | ||||||||||||| |||||||||| |||| |||||||||| || |||||||||||    
T  2797021 tgatggaataagaacttgggtgaagcatctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcagctgatgcata 2797109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 84 - 339
Target Start/End: Original strand, 2818035 - 2818290
Alignment:
Q  84 agtgaaatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctgaaaggtgtacacgcagaatttt 183  Q
    ||||||||||||||||||||||||| ||  ||| |    |||||||| |  |||||||||||||||||||| ||||||| ||||||||||  ||| ||||    
T  2818035 agtgaaatggcagaaactgcagtatcatcagccttgtcggaagtgtttcagttcctaaaagaagaaacaaagcttctgagaggtgtacacagagattttt 2818134  T
Q  184 cagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaagtagacacaaacgatggaattagaacttg 283  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||  ||| | || |||||||| ||||| ||    
T  2818135 cagacatcaaagatgaactagaaagcatccaagtcttcctcaaagatgcagatagaagggcagcagatgaagcggacgccaatgatggaataagaacatg 2818234  T
Q  284 ggtaaagcagctgcgcgaagcatcatttcacattgaagatatcatcgatgaatacc 339  Q
    ||| |||||  || | || |||||||||| |||||||||| |||| ||||||||||    
T  2818235 ggtgaagcaagtgagagatgcatcatttcgcattgaagatgtcattgatgaatacc 2818290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 82 - 354
Target Start/End: Original strand, 5412385 - 5412655
Alignment:
Q  82 agagtgaaatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctgaaaggtgtacacgcagaatt 181  Q
    ||||| |||||||||||||||||||||| ||||||||||   || |||||| ||||||| |||||||||||||||  ||||||||| |||||  ||| ||    
T  5412385 agagttaaatggcagaaactgcagtattgtttgcccttgggaaactgttccaattcctagaagaagaaacaaatcggctgaaaggtatacac--agattt 5412482  T
Q  182 ttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaagtagacacaaacgatggaattagaact 281  Q
    ||||||||||||||||||||| || | |||||||  |||||||||||||||||| | ||| || ||||||||||  ||| | || |||||||| |||||     
T  5412483 ttcagacatcaaagatgaactagaaatcattcaatccttcctcaaagatgcagacaaaagggctgcagatgaagcggacgccaatgatggaataagaaca 5412582  T
Q  282 tgggtaaagcagctgcgcgaagcatcatttcacattgaagatatcatcgatgaataccatcggctgatgcata 354  Q
    ||||| |||||  || | ||||||||||||| |||||||||| |||| || |||||||||||||| |||||||    
T  5412583 tgggtgaagcatatgagagaagcatcatttcgcattgaagatgtcattgacgaataccatcggctaatgcata 5412655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 83 - 354
Target Start/End: Original strand, 2758691 - 2758962
Alignment:
Q  83 gagtgaaatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctgaaaggtgtacacgcagaattt 182  Q
    ||||||||||||||||||||||||| |||  ||| | |  |||||||||| | | || || | | ||||||||||||| | ||||||||||  ||| ||     
T  2758691 gagtgaaatggcagaaactgcagtaatatcagccttgggagaagtgttccaacttcttaaggtaaaaacaaatcttctaagaggtgtacacaaagatttc 2758790  T
Q  183 tcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaagtagacacaaacgatggaattagaactt 282  Q
    | ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||| || || || ||||| ||||| |    
T  2758791 ttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaagcagaaaccaatgaaggaataagaacat 2758890  T
Q  283 gggtaaagcagctgcgcgaagcatcatttcacattgaagatatcatcgatgaataccatcggctgatgcata 354  Q
    |||| |||||  || | |||||||| |||| |||||||||||| || || ||||||| ||||||||| ||||    
T  2758891 gggtgaagcatatgagagaagcatcgtttcgcattgaagatataattgacgaataccttcggctgatccata 2758962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 22104265 - 22104337
Alignment:
Q  177 gaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcag 249  Q
    |||||| ||||| | |||||||||||||| ||||| |||| ||||||||||||||| ||||||||||| ||||    
T  22104265 gaatttgcagaccttaaagatgaacttgaaagcatccaagccttcctcaaagatgctgatagaagagctgcag 22104337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 22621845 - 22621766
Alignment:
Q  176 agaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaag 255  Q
    ||||||| ||||||| |||||||||||||| ||||| |||| |||||| || ||||| ||||||||||| |||| |||||    
T  22621845 agaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaag 22621766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 344
Target Start/End: Original strand, 2755705 - 2755782
Alignment:
Q  267 gatggaattagaacttgggtaaagcagctgcgcgaagcatcatttcacattgaagatatcatcgatgaataccatcgg 344  Q
    |||||||| ||||||||||| |||||  || | ||||||||||||| |||||||||| |||| |||||||||| ||||    
T  2755705 gatggaataagaacttgggtgaagcatatgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgg 2755782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 21936671 - 21936767
Alignment:
Q  153 aatcttctgaaaggtgtacacgcagaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcag 249  Q
    |||||||| |||||||| |||   ||||||  |||||| |||||||||||||| ||||| |||| |||||| || ||||| ||||||||||| ||||    
T  21936671 aatcttctcaaaggtgttcacaaggaatttggagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcag 21936767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 30990202 - 30990130
Alignment:
Q  177 gaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcag 249  Q
    ||||||||||| || |||||||||||||| |||||||||| ||| || |||||||| |||| |||||| ||||    
T  30990202 gaattttcagatattaaagatgaacttgaaagcattcaagcctttcttaaagatgctgataaaagagctgcag 30990130  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 21945190 - 21945247
Alignment:
Q  192 aaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcag 249  Q
    |||||||||||||| ||||||||||  |||||||| ||||| |||| |||||||||||    
T  21945190 aaagatgaacttgaaagcattcaagcattcctcaaggatgctgataaaagagcagcag 21945247  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 22178974 - 22179031
Alignment:
Q  192 aaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcag 249  Q
    ||||||||| |||| ||||| |||| ||||||||||||||| ||||||||||| ||||    
T  22178974 aaagatgaatttgaaagcatccaagccttcctcaaagatgctgatagaagagctgcag 22179031  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 3280827 - 3280736
Alignment:
Q  164 aggtgtacacgcagaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaag 255  Q
    ||||||||| | ||| |||| ||| |||||| ||||||||||||||||  |||  || ||||| |||||||||| |||||| || |||||||    
T  3280827 aggtgtacatggagacttttaagagatcaaacatgaacttgagagcatcaaagcttttctcaaggatgcagatacaagagctgctgatgaag 3280736  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 3200526 - 3200576
Alignment:
Q  185 agacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcaga 235  Q
    |||||||||| |||||||||||||||||||||| |  ||||| ||||||||    
T  3200526 agacatcaaatatgaacttgagagcattcaagtttcactcaaggatgcaga 3200576  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 3311179 - 3311133
Alignment:
Q  186 gacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgc 232  Q
    |||||||||||||| ||||||||||| |||| ||||||||| |||||    
T  3311179 gacatcaaagatgaccttgagagcatccaagccttcctcaaggatgc 3311133  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 3322778 - 3322732
Alignment:
Q  186 gacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgc 232  Q
    |||||||||||||| ||||||||||| |||| ||||||||| |||||    
T  3322778 gacatcaaagatgaccttgagagcatccaagccttcctcaaggatgc 3322732  T

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Target: scaffold0691 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 89 - 354
Target Start/End: Complemental strand, 6807 - 6542
Alignment:
Q  89 aatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctgaaaggtgtacacgcagaattttcagac 188  Q
    ||||||||||||||||||||| |||||||| |  ||| |||||| |||||||||| |||||||||||||||||| |||||||||| |||| ||| |||||    
T  6807 aatggcagaaactgcagtattgtttgccctcggagaattgttccaattcctaaaaaaagaaacaaatcttctgagaggtgtacacacagattttacagac 6708  T
Q  189 atcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaagtagacacaaacgatggaattagaacttgggtaa 288  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||  || |||||||||| |||||| || |||||||| ||||||||||| |    
T  6707 atcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagacagaaaggctgcagatgaagcagacactaatgatggaataagaacttgggtga 6608  T
Q  289 agcagctgcgcgaagcatcatttcacattgaagatatcatcgatgaataccatcggctgatgcata 354  Q
    ||||  || | ||||||||||||| |||||||||| | || |||||||||| ||||||||| ||||    
T  6607 agcatatgagggaagcatcatttcgcattgaagatgttattgatgaataccttcggctgatccata 6542  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 261
Target Start/End: Original strand, 34975035 - 34975137
Alignment:
Q  159 ctgaaaggtgtacacgcagaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaagtag 258  Q
    ||||||||||| |||  ||||||| ||||||| ||| ||||||| || |||||||||| ||||||||||||| | ||||||||||| |||| ||||| ||    
T  34975035 ctgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagattctgatagaagagctgcagctgaaggag 34975134  T
Q  259 aca 261  Q
    |||    
T  34975135 aca 34975137  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 34979679 - 34979795
Alignment:
Q  145 aagaaacaaatcttctgaaaggtgtacacgcagaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagc 244  Q
    ||||||| || || || |||||||| |||  ||||||| ||||||| ||| ||||||| || |||||| ||| |||||| |||||||| |||||||||||    
T  34979679 aagaaaccaaactactaaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattgaagccttccttaaagatgctgatagaagagc 34979778  T
Q  245 agcagatgaagtagaca 261  Q
     |||| ||||| |||||    
T  34979779 tgcagctgaaggagaca 34979795  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 261
Target Start/End: Original strand, 34988735 - 34988852
Alignment:
Q  144 gaagaaacaaatcttctgaaaggtgtacacgcagaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagag 243  Q
    |||||||| || || ||||||||||| |||  ||||||| ||||||| ||| ||||||| || ||||| |||  ||||||  ||||||| ||||||||||    
T  34988735 gaagaaaccaaactactgaaaggtgttcacaaagaatttgcagacattaaatatgaactggaaagcatccaaaccttccttgaagatgctgatagaagag 34988834  T
Q  244 cagcagatgaagtagaca 261  Q
    | |||| ||||| |||||    
T  34988835 ctgcagctgaaggagaca 34988852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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