View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6353_low_9 (Length: 423)
Name: NF6353_low_9
Description: NF6353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6353_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 69 - 407
Target Start/End: Original strand, 25813330 - 25813676
Alignment:
| Q |
69 |
caatatcaattgacacaacttttcataccaaacgtattgattgataatcaacaatcaagtccttaatt---------ataaaactataaaatgtatccat |
159 |
Q |
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| T |
25813330 |
caatatcaactgacacaatttttcataccaaacgtattgattgataatcaacaatcaagtcgttaattctctgacttataaaactataaaatgtatccat |
25813429 |
T |
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| Q |
160 |
catataacaactttcacacataaaaaagataaccctgcagaagcaaacttcaatcaaatatatttttgtagttgaaataaaccaccaaaacaatatgctt |
259 |
Q |
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| T |
25813430 |
catataacaactttcacacataaaaaagataaccctgcagaagcaaacttcactcaaatatatttt-gtaggtgaaataaaccaccaaaacaatatgctt |
25813528 |
T |
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| Q |
260 |
ccagaactctctgatgatgttttaatctttataattacgttagttgctacatcttcactgaaagatcttctcaatttgagcaaaacatgcaaagttttga |
359 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25813529 |
ccagaactctctgacgatgttttaatctttataattacgttggttgctacatcttcactgaaagatcttctcaatttgagcaaaacatgcaaagttttga |
25813628 |
T |
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| Q |
360 |
agaagcattgtctgaatgcagaagttgcacattgttgtgcattggata |
407 |
Q |
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| T |
25813629 |
agaagcattgtctgaatgcagaagttgcacattgttgtgcattggata |
25813676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 25813211 - 25813272
Alignment:
| Q |
10 |
gcataggttcacattaaattattttttaacagaaacaattacaccttctcatgagggtacaa |
71 |
Q |
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| T |
25813211 |
gcataggttcacattaaattattttttaacagaaacaattacaccttctcatgagggtacaa |
25813272 |
T |
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