View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6354_low_1 (Length: 588)

Name: NF6354_low_1
Description: NF6354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6354_low_1
NF6354_low_1
[»] chr1 (5 HSPs)
chr1 (11-564)||(48982822-48983386)
chr1 (431-552)||(21182964-21183085)
chr1 (431-541)||(14321030-14321140)
chr1 (475-557)||(1656752-1656834)
chr1 (431-541)||(24084142-24084252)
[»] chr3 (6 HSPs)
chr3 (442-552)||(37288650-37288759)
chr3 (434-549)||(53256578-53256693)
chr3 (466-552)||(8557612-8557698)
chr3 (493-544)||(11083274-11083323)
chr3 (444-541)||(34809154-34809251)
chr3 (465-510)||(37509267-37509312)
[»] chr6 (4 HSPs)
chr6 (470-552)||(2660349-2660431)
chr6 (467-552)||(31238355-31238440)
chr6 (467-552)||(31247725-31247810)
chr6 (473-557)||(9062845-9062929)
[»] chr5 (1 HSPs)
chr5 (428-552)||(32565918-32566042)
[»] chr4 (8 HSPs)
chr4 (441-547)||(11777164-11777271)
chr4 (473-557)||(52708486-52708570)
chr4 (473-557)||(779775-779860)
chr4 (467-552)||(10519582-10519667)
chr4 (503-552)||(43525649-43525698)
chr4 (431-552)||(53920190-53920311)
chr4 (476-524)||(16467873-16467921)
chr4 (442-530)||(53599339-53599427)
[»] chr8 (5 HSPs)
chr8 (434-552)||(4305325-4305442)
chr8 (460-552)||(7671716-7671807)
chr8 (467-546)||(32668106-32668185)
chr8 (466-543)||(26040143-26040220)
chr8 (433-480)||(43623599-43623646)
[»] chr2 (6 HSPs)
chr2 (444-543)||(33500081-33500180)
chr2 (500-553)||(26296836-26296889)
chr2 (499-552)||(42491804-42491857)
chr2 (431-530)||(5963946-5964045)
chr2 (429-553)||(8257222-8257348)
chr2 (493-557)||(37807297-37807361)
[»] chr7 (4 HSPs)
chr7 (465-543)||(31211884-31211962)
chr7 (467-552)||(41750647-41750732)
chr7 (440-544)||(10701648-10701753)
chr7 (431-525)||(41750468-41750562)


Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 11 - 564
Target Start/End: Complemental strand, 48983386 - 48982822
Alignment:
Q  11 tagcataggtgatgaaaagacaagtcgtgtgcacgaaaatgattcccttgaattcttaaatcaatcataagtacagatcaccataagactgagtgagtga 110  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  48983386 tagcataggtgatgaaaagacaagtcgtgtgcgcgaaaatgattcccttgaattcttaaatcaatcataagtacagatcaccataagactgagtga---- 48983291  T
Q  111 cactgcctcaccctcacaagtcatctctacaacatcaattgctacaaataacaccaacatggtaaaaatgtacttgtttcttttcctttaccaaaagcgt 210  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48983290 caatgcctcaccctcacaagtcatctctacaacatcaattgctacaaataacaccaacatggtaaaaatgtacttgtttcttttcctttaccaaaagcgt 48983191  T
Q  211 gttaattaattaagtgaactatgtctcagctcccaaaatgaatgccattgccaccaggtgatggaacttgactaagtacggtttacaaattactttcatg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  48983190 gttaattaattaagtgaactatgtctcagctcccaaaatgaatgccattgccaccaggtgatggaacttgactaagtacggtttacaaattactttaaag 48983091  T
Q  311 gaatggcaaccatggcattaaggatcaagtaagtataaggttgggaaggaactagctatctttattttgtcaagaaattacgataataatattgcttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48983090 gaatggcaaccatggcattaaggatcaagtaagtataaggttgggaaagaactagctatcttt-ttttgtcaagaaattacgataataatattgcttatt 48982992  T
Q  411 ttttataggaaaatgttaaatagt----------------taaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttt 494  Q
    |||||||| |||||||||||||||                |||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  48982991 ttttatagaaaaatgttaaatagtactccaggacatcaactaaagagattaatatagaaattttacattaaaaaatgatgaaaagttgaatgtttcgttt 48982892  T
Q  495 tataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaatcatttcaatac 564  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48982891 tataaaagtaaaaaagttattgtttttaatagaaaatttctatttttaactttcttaatcatttcaatac 48982822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 431 - 552
Target Start/End: Complemental strand, 21183085 - 21182964
Alignment:
Q  431 tagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaa 530  Q
    |||||||  |||||||||| |||| |||  |||  ||||||||||||| | ||||||| |  |||| |||||| |||||||| |||  ||||||| || |    
T  21183085 tagttaagaagattaatatgaaaactttgcattgggaaatgatgaaaaatggaatgttccactttagaaaagtcaaaaagttgttgtctttaataaaaga 21182986  T
Q  531 tttctatttttaactttcttaa 552  Q
    ||| ||||||||||||||||||    
T  21182985 tttatatttttaactttcttaa 21182964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 541
Target Start/End: Complemental strand, 14321140 - 14321030
Alignment:
Q  431 tagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaa 530  Q
    |||||||  ||||||||||| ||||| |  ||| | || |||||||||||  |||||||  |||||| |||||||||||||| ||| |||||||  |||     
T  14321140 tagttaagaagattaatatagaaattatgcattgaaaattgatgaaaagtaaaatgtttaattttatgaaagtaaaaaagttgttgtttttaatgaaaat 14321041  T
Q  531 tttctattttt 541  Q
    |||||||||||    
T  14321040 tttctattttt 14321030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 557
Target Start/End: Complemental strand, 1656834 - 1656752
Alignment:
Q  475 aaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaatcatt 557  Q
    |||||| ||||||||   |||||||||||||||||| | ||| |||||||| ||  |||||||||||||| | |||| |||||    
T  1656834 aaaagtggaatgtttaaatttataaaagtaaaaaaggtgttgtttttaataaaatttttctatttttaacatccttagtcatt 1656752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 541
Target Start/End: Original strand, 24084142 - 24084252
Alignment:
Q  431 tagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaa 530  Q
    |||||||| ||||||||||||||||| | |||| | || |||| |||||| ||||||||   ||||| ||||| ||||| || ||| |||| ||  |||     
T  24084142 tagttaaaaagattaatataaaaattatgtattgaaaattgataaaaagtggaatgtttaactttatgaaagtcaaaaaattgttgtttttgatgaaaat 24084241  T
Q  531 tttctattttt 541  Q
    |||||||||||    
T  24084242 tttctattttt 24084252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 442 - 552
Target Start/End: Original strand, 37288650 - 37288759
Alignment:
Q  442 attaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctattttt 541  Q
    ||||||||||||||||| |||| | |||||||||||||||||||||| | ||||| |||||| |||||||||| |  ||||||| |||| ||||||||||    
T  37288650 attaatataaaaattttgtattgaaaaatgatgaaaagttgaatgttccattttaaaaaagtcaaaaagttatcgtctttaata-aaaaattctattttt 37288748  T
Q  542 aactttcttaa 552  Q
    |||||| ||||    
T  37288749 aacttttttaa 37288759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 549
Target Start/End: Complemental strand, 53256693 - 53256578
Alignment:
Q  434 ttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaattt 533  Q
    ||||| ||||||| ||  |||||||  ||||| || |||| ||||||  ||||||||  ||||| ||||| ||||| |||||| |||||||| |||||||    
T  53256693 ttaaagagattaaaatggaaattttgcattaaaaagtgataaaaagtaaaatgtttcaatttatgaaagtcaaaaaattattgtttttaatataaaattt 53256594  T
Q  534 ctatttttaactttct 549  Q
    ||| ||||||||||||    
T  53256593 ctacttttaactttct 53256578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 466 - 552
Target Start/End: Original strand, 8557612 - 8557698
Alignment:
Q  466 gaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 552  Q
    ||||||||||||||| |||||||||  |||| |||||| || ||||| |||  ||||||| ||| ||||||||| ||||||||||||    
T  8557612 gaaatgatgaaaagtggaatgtttcactttagaaaagtcaataagttgttgtctttaataaaaagtttctatttctaactttcttaa 8557698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 544
Target Start/End: Original strand, 11083274 - 11083323
Alignment:
Q  493 tttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaac 544  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  11083274 tttataaaagtaaaaaa-ttattgtttttaata-aaaatttctatttttaac 11083323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 541
Target Start/End: Original strand, 34809154 - 34809251
Alignment:
Q  444 taatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctattttt 541  Q
    ||||||| ||| |||  ||| ||||||| |||||||| ||||||||   ||||| ||||| ||||| || |||||||||||| ||||  |||||||||    
T  34809154 taatatagaaactttgcattgagaaatggtgaaaagtagaatgtttaactttatgaaagtcaaaaaattgttgcttttaataaaaaaaatctattttt 34809251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 510
Target Start/End: Complemental strand, 37509312 - 37509267
Alignment:
Q  465 agaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaag 510  Q
    |||||||||||||||| ||||||||| ||||| |||||| ||||||    
T  37509312 agaaatgatgaaaagtggaatgtttcattttagaaaagtcaaaaag 37509267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 470 - 552
Target Start/End: Original strand, 2660349 - 2660431
Alignment:
Q  470 tgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 552  Q
    ||||||||||| ||| |||||  ||||||||||| |||||||| ||| |||||||||||||| ||||||||||||||| ||||    
T  2660349 tgatgaaaagtagaacgtttcactttataaaagttaaaaagttgttgtttttaatagaaaatatctatttttaacttttttaa 2660431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 467 - 552
Target Start/End: Original strand, 31238355 - 31238440
Alignment:
Q  467 aaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 552  Q
    ||||||||||||||  |||||| |  ||||||||||| |||||||| ||| ||||||| ||||| |||||||||||||||||||||    
T  31238355 aaatgatgaaaagtgaaatgttccactttataaaagtcaaaaagttgttgtttttaatggaaaaattctatttttaactttcttaa 31238440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 467 - 552
Target Start/End: Original strand, 31247725 - 31247810
Alignment:
Q  467 aaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 552  Q
    ||||||||||||||  |||||| |  ||||||||||| |||||||| ||| ||||||| ||||||||||||||| |||||||||||    
T  31247725 aaatgatgaaaagtgaaatgttccactttataaaagtcaaaaagttgttgtttttaatggaaaatttctattttaaactttcttaa 31247810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 557
Target Start/End: Complemental strand, 9062929 - 9062845
Alignment:
Q  473 tgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaatcatt 557  Q
    |||||||||||||||||   ||||| ||||  |||||||| ||| |||||||  ||| ||||||||||| || | ||||||||||    
T  9062929 tgaaaagttgaatgtttaactttatgaaagataaaaagttgttgtttttaatgaaaattttctatttttgacatccttaatcatt 9062845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 552
Target Start/End: Complemental strand, 32566042 - 32565918
Alignment:
Q  428 aaatagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaataga 527  Q
    ||||||||||  ||| |||||||||||||||| |||   || ||||||||||| |||| ||    ||||||||||| ||||  |||||| ||||||| ||    
T  32566042 aaatagttaaggagactaatataaaaattttacattggaaagtgatgaaaagtggaatattcgagtttataaaagtcaaaagtttattgtttttaatgga 32565943  T
Q  528 aaatttctatttttaactttcttaa 552  Q
    || ||||||||||||||||||||||    
T  32565942 aattttctatttttaactttcttaa 32565918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 441 - 547
Target Start/End: Original strand, 11777164 - 11777271
Alignment:
Q  441 gattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaat-agaaaatttctattt 539  Q
    |||||||||| |||| ||  ||||  |||||| ||||||||||||||||| ||||||||||||||||||| | |||  |||||| | ||||||| |||||    
T  11777164 gattaatatagaaatcttgcattagaaaatgacgaaaagttgaatgtttcattttataaaagtaaaaaagatgttgtgtttaataaaaaaatttatattt 11777263  T
Q  540 ttaacttt 547  Q
    ||||||||    
T  11777264 ttaacttt 11777271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 473 - 557
Target Start/End: Complemental strand, 52708570 - 52708486
Alignment:
Q  473 tgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaatcatt 557  Q
    |||||||||||||||||   ||||| ||||| |||||||| ||| |||||||| ||||||||| |||||||| | ||||| ||||    
T  52708570 tgaaaagttgaatgtttaactttatgaaagtcaaaaagttgttgtttttaataaaaaatttctctttttaacatccttaaccatt 52708486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 473 - 557
Target Start/End: Original strand, 779775 - 779860
Alignment:
Q  473 tgaaaagttgaatgtttcgttttataaaagt-aaaaaagttattgcttttaatagaaaatttctatttttaactttcttaatcatt 557  Q
    |||||||||||||||||   ||||| ||||| ||||||||| ||| |||||||  ||| ||||||||||| || ||||||||||||    
T  779775 tgaaaagttgaatgtttaactttatgaaagtcaaaaaagttgttgtttttaatgaaaattttctatttttgacattcttaatcatt 779860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 552
Target Start/End: Original strand, 10519582 - 10519667
Alignment:
Q  467 aaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 552  Q
    ||||||| |||||| ||||||| |  |||| |||||| ||||||||||||  ||||||| ||||  ||||||| ||||||||||||    
T  10519582 aaatgattaaaagtggaatgttccactttagaaaagtcaaaaagttattgtctttaataaaaaaaatctatttctaactttcttaa 10519667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 552
Target Start/End: Original strand, 43525649 - 43525698
Alignment:
Q  503 taaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 552  Q
    |||||||||||||| |||||||||||||||| || |||| ||||||||||    
T  43525649 taaaaaagttattgtttttaatagaaaatttttaattttgactttcttaa 43525698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 431 - 552
Target Start/End: Complemental strand, 53920311 - 53920190
Alignment:
Q  431 tagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaa 530  Q
    |||||||  |||||||||| |||| |||| |||   |||| |||| |||| |||||||||  |||| |||||| |||||||| |||  ||||||  ||||    
T  53920311 tagttaaggagattaatatgaaaactttacattggaaaataatgagaagtggaatgtttcactttagaaaagtcaaaaagttgttgtctttaatgaaaaa 53920212  T
Q  531 tttctatttttaactttcttaa 552  Q
    ||| ||| ||||||||||||||    
T  53920211 tttatatatttaactttcttaa 53920190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 524
Target Start/End: Complemental strand, 16467921 - 16467873
Alignment:
Q  476 aaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaat 524  Q
    ||||||||||||||   ||||| |||||||||||||||||| |||||||    
T  16467921 aaagttgaatgtttaactttatgaaagtaaaaaagttattgtttttaat 16467873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 530
Target Start/End: Original strand, 53599339 - 53599427
Alignment:
Q  442 attaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaa 530  Q
    ||||||||| ||||| || ||||  || ||||||||| |  |||||||   ||||| |||||||||||||||||| |||||||| ||||    
T  53599339 attaatatagaaattatacattagaaattgatgaaaaatgtaatgtttaactttatgaaagtaaaaaagttattgtttttaataaaaaa 53599427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 434 - 552
Target Start/End: Complemental strand, 4305442 - 4305325
Alignment:
Q  434 ttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaattt 533  Q
    ||||| |||||||||||||||||||| ||||  ||||||||||||||  ||||||    ||||| |||||||||||  | | | |||||||| |||| ||    
T  4305442 ttaaagagattaatataaaaattttacattagaaaatgatgaaaagtaaaatgttctactttatgaaagtaaaaaaaatgtcg-ttttaataaaaaaatt 4305344  T
Q  534 ctatttttaactttcttaa 552  Q
    |||||||||||||||||||    
T  4305343 ctatttttaactttcttaa 4305325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 552
Target Start/End: Original strand, 7671716 - 7671807
Alignment:
Q  460 tattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 552  Q
    |||||| |||| |||||||||  |||||| | ||||| |||||| |||||||| ||| |||||||| ||||| | ||||||||||||||||||    
T  7671716 tattaaaaaataatgaaaagtaaaatgttccattttaaaaaagtcaaaaagttgttgtttttaata-aaaatatttatttttaactttcttaa 7671807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 546
Target Start/End: Complemental strand, 32668185 - 32668106
Alignment:
Q  467 aaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactt 546  Q
    ||||||| |||||| ||||||||| |||||||||||| ||||| || ||| |||||||  ||| || |||||||||||||    
T  32668185 aaatgattaaaagtggaatgtttcattttataaaagtcaaaaatttgttgtttttaatgaaaacttcctatttttaactt 32668106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 466 - 543
Target Start/End: Original strand, 26040143 - 26040220
Alignment:
Q  466 gaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaa 543  Q
    ||||||||||||||| ||| ||||| |||||| |||||  ||||||| ||| ||| ||| || |||||||||||||||    
T  26040143 gaaatgatgaaaagtggaaagtttcattttatgaaagtcgaaaagttgttgttttgaatggagaatttctatttttaa 26040220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 480
Target Start/End: Complemental strand, 43623646 - 43623599
Alignment:
Q  433 gttaaatagattaatataaaaattttatattaagaaatgatgaaaagt 480  Q
    |||||| ||||||||||||||| |||| ||||| ||||||||||||||    
T  43623646 gttaaaaagattaatataaaaactttacattaaaaaatgatgaaaagt 43623599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 444 - 543
Target Start/End: Complemental strand, 33500180 - 33500081
Alignment:
Q  444 taatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaa 543  Q
    ||||||| ||||||| |||||  || ||||||||||| |||||||||   |||||||||| |||||||| | | |||||||||||| ||| || ||||||    
T  33500180 taatatagaaattttgtattagaaagtgatgaaaagtggaatgtttcaccttataaaagttaaaaagttgtcgtttttaatagaaattttttaattttaa 33500081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 26296889 - 26296836
Alignment:
Q  500 aagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaat 553  Q
    |||| ||||||||||||  |||||| |||||||| |||||||||||||||||||    
T  26296889 aagtcaaaaagttattgtatttaattgaaaatttttatttttaactttcttaat 26296836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 499 - 552
Target Start/End: Complemental strand, 42491857 - 42491804
Alignment:
Q  499 aaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 552  Q
    ||||| |||||||| ||| |||||||| ||||||||| ||||||||||||||||    
T  42491857 aaagttaaaaagtttttgtttttaataaaaaatttctttttttaactttcttaa 42491804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 530
Target Start/End: Original strand, 5963946 - 5964045
Alignment:
Q  431 tagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaa 530  Q
    |||||||| ||||||||||||||||| |  ||| | || ||||||||||| |||| |||  |||||| ||||| ||||| |||||| || ||||| ||||    
T  5963946 tagttaaaaagattaatataaaaattatgcattgaaaattgatgaaaagtggaatatttaattttatgaaagttaaaaaattattgtttataataaaaaa 5964045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 553
Target Start/End: Complemental strand, 8257348 - 8257222
Alignment:
Q  429 aatagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaat--ag 526  Q
    |||||||||  ||||||||||| ||| |||  |||  ||||||||||||| | ||||||| |  |||| |||||| |||||||| |||  ||||||  |     
T  8257348 aatagttaaggagattaatatagaaactttgcattgggaaatgatgaaaaatggaatgttccactttagaaaagtcaaaaagttgttgtctttaataaaa 8257249  T
Q  527 aaaatttctatttttaactttcttaat 553  Q
    ||||  |||||||||||||||||||||    
T  8257248 aaaaaatctatttttaactttcttaat 8257222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 557
Target Start/End: Original strand, 37807297 - 37807361
Alignment:
Q  493 tttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaatcatt 557  Q
    ||||| ||||| |||||| | ||| |||||||| |||||||||||||||||  | ||||||||||    
T  37807297 tttatgaaagtcaaaaaggtgttgtttttaataaaaaatttctatttttaatatccttaatcatt 37807361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 543
Target Start/End: Complemental strand, 31211962 - 31211884
Alignment:
Q  465 agaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaa 543  Q
    |||||||||||||||| ||||||| |  || |||||||| |||||||| |||  ||||||| ||| |||||||||||||    
T  31211962 agaaatgatgaaaagtggaatgttccacttcataaaagtcaaaaagttgttgtctttaataaaaagtttctatttttaa 31211884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 552
Target Start/End: Complemental strand, 41750732 - 41750647
Alignment:
Q  467 aaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 552  Q
    |||||||||||||| |||||||||  |||| |||||| ||||| ||||||  ||||||| |||| || ||||| || |||||||||    
T  41750732 aaatgatgaaaagtggaatgtttcactttagaaaagtcaaaaaattattgtctttaataaaaaaattatatttctagctttcttaa 41750647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 544
Target Start/End: Original strand, 10701648 - 10701753
Alignment:
Q  440 agattaatataaaaattttatattaagaaatga-tgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatag-aaaatttctat 537  Q
    ||||||||||| ||||| ||||||| ||||| | |||||||||||||||||   ||||||||||| ||||| |   || ||||||| | |||||||||||    
T  10701648 agattaatatagaaattatatatta-gaaattagtgaaaagttgaatgtttaagtttataaaagtcaaaaaatcgatgtttttaatggaaaaatttctat 10701746  T
Q  538 ttttaac 544  Q
    |||||||    
T  10701747 ttttaac 10701753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 525
Target Start/End: Complemental strand, 41750562 - 41750468
Alignment:
Q  431 tagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaata 525  Q
    |||||||  |||||||||  |||| |||  |||||||||||||||||||| || |||| |  | ||||||||| |||||||| ||| ||||||||    
T  41750562 tagttaaggagattaataagaaaactttgcattaagaaatgatgaaaagtggagtgttccactgtataaaagtcaaaaagttgttgtttttaata 41750468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University