View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6354_low_2 (Length: 374)
Name: NF6354_low_2
Description: NF6354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6354_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 56354289 - 56354634
Alignment:
| Q |
11 |
cagagacggttctgtctttaacgacaaaatcagagtgagagtcattctcctgttcctgcagaaacaaataaaaaagtcaacctca-tagtaagagtaatt |
109 |
Q |
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| T |
56354289 |
cagagacgcttctgtctttaacgacaacatgagagtgagagtcattatcctgttcctgcagaaacaaataaaaaagtcaacctcaatagtaagagtaatt |
56354388 |
T |
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| Q |
110 |
gaattgaattg----------gaatggaaaaggaagagttaatttacttgagcggtgggaagtnnnnnnnnnnnnnnnnnntaacatattgaggttgatg |
199 |
Q |
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| T |
56354389 |
gaattgaattgaattgaattggaatggaaaaggaagagttaatttacttgggcggtgggaag---------agcagcagcataacatattgaggttgatg |
56354479 |
T |
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| Q |
200 |
ataatacatttttgttgttgttgtttatagatatttgaggacctgacctgactacagtaacaacagtgagtaacaaacaaacaaacaagtttatttaaca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56354480 |
ataatacatttttgttgttgttgtttatagatatttgaggacctgacctgactacagtaacaacagtgagtaacaaacaaacaaacaagtttatttaaca |
56354579 |
T |
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| Q |
300 |
aagagtacagattgacttgcctttaggtgtagttgtaagagatttgagtgttggg |
354 |
Q |
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| T |
56354580 |
aagagtacagattgacttgcctttagctgtagttgtaagagatttgagtgttggg |
56354634 |
T |
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