View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6354_low_3 (Length: 367)
Name: NF6354_low_3
Description: NF6354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6354_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 349
Target Start/End: Original strand, 39689206 - 39689551
Alignment:
| Q |
10 |
agtagcaaagggcatgttccagtgctagtagggaaaaaggaag------aagaagaagatatggagaggatttgggtgagcatcaaagtgattcaccatc |
103 |
Q |
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| T |
39689206 |
agtaacaaagggcatgttccagtgctagtaggcaaaaaggaagaagaagaagaagaagatatggagaggatttgggtgagcatcaaagtgattcaccatc |
39689305 |
T |
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| Q |
104 |
ccaaaattgttgaattgttggaacaatctgctaaagaatatggataccaacaaggtgtgcttagaatcagacgtgatattgagatcttcaaagtcattct |
203 |
Q |
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| T |
39689306 |
ccaaaattgttgaattgttggaacaatctgctaaagaatatggataccaacagggtgtgcttagaatcagacgtgatattgagatcttcaaagtcattct |
39689405 |
T |
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| Q |
204 |
tgctaacatatcttgcacttcacgggttgctttgtctaattaattgtctttgttattagtattaaactcaatgtaacattattattttcattcaaatccc |
303 |
Q |
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| T |
39689406 |
tgctaacatatcttgcacttcacgggttgctttgtctaattaattgtctttgttattagtattaaactcaatgtaacattattattttcattcaaatccc |
39689505 |
T |
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| Q |
304 |
ctttttattcaccaaactctctgtaataatatatagtctatctttt |
349 |
Q |
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| T |
39689506 |
ctttttattcaccaaactctctgtaataatatatagtctatctttt |
39689551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 57 - 212
Target Start/End: Original strand, 39683794 - 39683949
Alignment:
| Q |
57 |
agaagatatggagaggatttgggtgagcatcaaagtgattcaccatcccaaaattgttgaattgttggaacaatctgctaaagaatatggataccaacaa |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||| |
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| T |
39683794 |
agaagatatggagaggatttgggtgagcatcaaagtgattcatcatccaaaaattgttgaattcttagaacaatctgctaaagagtatggataccaacaa |
39683893 |
T |
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| Q |
157 |
ggtgtgcttagaatcagacgtgatattgagatcttcaaagtcattcttgctaacat |
212 |
Q |
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| T |
39683894 |
ggtgtgcttagaatcatatgtgatgttgacgactttaaagacattcttgctaacat |
39683949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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