View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_high_1 (Length: 542)
Name: NF6355_high_1
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 307 - 533
Target Start/End: Complemental strand, 15380961 - 15380735
Alignment:
| Q |
307 |
cacacatactcacgtgcattgcacactccaaaagtccacacaatgcagctagcttcaacttactactagtaacannnnnnnnaactgtgggatcccatca |
406 |
Q |
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| T |
15380961 |
cacacatactcacgtgcattgcacactccaaaagtccacacaatgcagctagcttcaacttactaccagtaacattttttttaactgtgggatcccatca |
15380862 |
T |
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| Q |
407 |
aagtgacttgtgcaagttgaaagaagaaagcatactgtccaaaatgaggagattgactaagaaaaacccattataagaaatagttcagattccaaagttt |
506 |
Q |
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| T |
15380861 |
aagtgacttgtgcaagttgaaagaagaaagcatactgtccaaaatgaggagattgactaagaaaaacccattataagaaatagttcaaattccaaagttt |
15380762 |
T |
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| Q |
507 |
caacccaattgatataactgctctgtg |
533 |
Q |
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| T |
15380761 |
caacccaattgatataactgctctgtg |
15380735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 15381284 - 15381183
Alignment:
| Q |
3 |
gaaagtaaaggagatatgtgaaaag---atatatatcataaaatttataattgctattaatgaattcaatacacatcacacaggaaaaaggctccaaaaa |
99 |
Q |
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| T |
15381284 |
gaaagtaaagtagatatgtgaaaactgaaaagatataataaaatttataattgctattaatgaattcaatacacatcacacaggaaaaaggctccaaaaa |
15381185 |
T |
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| Q |
100 |
cc |
101 |
Q |
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| T |
15381184 |
cc |
15381183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 15381086 - 15381025
Alignment:
| Q |
182 |
ctatagatacgtgtttccatcacacacgttggacaccagataatgggtcctgtatagttagg |
243 |
Q |
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| T |
15381086 |
ctatagatacgtgtttccaccacacacgttggacaccagataatgggtcctgtatagttagg |
15381025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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