View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_high_21 (Length: 333)
Name: NF6355_high_21
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 37393233 - 37392922
Alignment:
| Q |
1 |
tcatcatcattttttaatccaatgattattagaacctaaataaactaaaagcactggggaaggctatgatgaaaactgaaaaccaaacacacgtcagcag |
100 |
Q |
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| T |
37393233 |
tcattatcattttttaatccaatgattattagcacctaaataaactaaaagcactggggaaggctatgatgaaaactgaaaaccaaacacacgtcagcag |
37393134 |
T |
|
| Q |
101 |
gttaatggcctattaaagaaaatatccaaattggcaaattttgattttgannnnnnnnncttcaagtcaatgtttcccatgttattgttcttttaaatca |
200 |
Q |
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| T |
37393133 |
gttaatggcctattaaagaaaatatccaaattggcaaattttgattttgatttttttt--ttcaagtcaatgtttcccatgttattgttcttttaaatca |
37393036 |
T |
|
| Q |
201 |
aatcttctcgtcgaaattttagcttgtaggtaatctgcattatatgaaaccaataaccacctgaagaaactcctgaagcttacatagaatttgattcaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37393035 |
aatcttctcgtcgaaattttagcttgtaggtaatctgcattatattacaccaataaccatctgaagaaactcctgaagcttacatagaatttgattcaag |
37392936 |
T |
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| Q |
301 |
tccaaaaaccagct |
314 |
Q |
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|||||||||||||| |
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| T |
37392935 |
tccaaaaaccagct |
37392922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 37912984 - 37913086
Alignment:
| Q |
38 |
aaataaactaaaagcactggggaaggctatgatgaaaactgaaaaccaaacacacgtcagcaggttaatggcctattaaagaaaatatccaaattggcaa |
137 |
Q |
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|||||||| |||||| ||||||||||||| |||||||| ||||||||||||| | | ||||| |||||| |||||||||||||| ||||||||||||| |
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| T |
37912984 |
aaataaac-aaaagcgctggggaaggctacgatgaaaaatgaaaaccaaacatgcattagcagattaatgatctattaaagaaaatgtccaaattggcaa |
37913082 |
T |
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| Q |
138 |
attt |
141 |
Q |
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|||| |
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| T |
37913083 |
attt |
37913086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 37913096 - 37913145
Alignment:
| Q |
161 |
ttcaagtcaatgtttcccatgttattgttcttttaaatcaaatcttctcg |
210 |
Q |
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|||||| || ||| |||| ||||| ||||||||||||||||||||||||| |
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| T |
37913096 |
ttcaagccattgtctcccctgttactgttcttttaaatcaaatcttctcg |
37913145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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