View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_high_22 (Length: 330)
Name: NF6355_high_22
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 14283211 - 14283502
Alignment:
| Q |
19 |
cacagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14283211 |
cacagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaa |
14283310 |
T |
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| Q |
119 |
gcagtgaacaaagaagcaatcacaatgtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaa |
218 |
Q |
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| T |
14283311 |
gcagtgaacaaagaagcaatcacaaagtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaa |
14283410 |
T |
|
| Q |
219 |
tcactatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagcc |
310 |
Q |
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| T |
14283411 |
tcactatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagcc |
14283502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 14304969 - 14305260
Alignment:
| Q |
19 |
cacagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaa |
118 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| || ||||||| |||||||||||| ||| |
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| T |
14304969 |
cacagataatggaagattaaccaatgagaatatgtcatctattctcaaactaagctccaacttttcttcacggacagttatcaatcgaacaatagccgaa |
14305068 |
T |
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| Q |
119 |
gcagtgaacaaagaagcaatcacaatgtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaa |
218 |
Q |
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| T |
14305069 |
acagcaaacaaagtagcaatcacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaacattagaa |
14305168 |
T |
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| Q |
219 |
tcactatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagcc |
310 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14305169 |
tcactataactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagcc |
14305260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 14321360 - 14321651
Alignment:
| Q |
19 |
cacagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||||||| |||||| || ||||||| |||||||||||||||| |
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| T |
14321360 |
cacagataatggaagattaaccaatgagaatatatcatctattttcaaactaagctccaacttttcttcaccgacagttatcaatcgaacaatagctgaa |
14321459 |
T |
|
| Q |
119 |
gcagtgaacaaagaagcaatcacaatgtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaa |
218 |
Q |
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|||| ||||||| ||||| |||| ||||||| |||||| ||||| |||| |||||||||| |||||| ||| |||||| |||||||||||||||| | |
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| T |
14321460 |
gcagcaaacaaagttgcaattacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaccattagta |
14321559 |
T |
|
| Q |
219 |
tcactatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagcc |
310 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14321560 |
tcactatcactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaagtttattggtttgagtaaaagcc |
14321651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 310
Target Start/End: Original strand, 25886045 - 25886333
Alignment:
| Q |
22 |
agataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaagca |
121 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |||| | ||| ||||| | || ||||||| | |
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| T |
25886045 |
agataatggaagattaaccaatgagaatatgtcatctattctcaaactaagttccaacttctcctcactggcatttacaattcggaaaacagctgaaata |
25886144 |
T |
|
| Q |
122 |
gtgaacaaagaagcaatcacaatgtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaatca |
221 |
Q |
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| ||||||||||||||||||| ||||||| |||||| ||||| |||| |||||||||| |||||| ||| |||||| ||||||||| ||||||||||| |
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| T |
25886145 |
gcaaacaaagaagcaatcacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaacattagaatca |
25886244 |
T |
|
| Q |
222 |
ctatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagcc |
310 |
Q |
| |
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| || || |||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25886245 |
caatcacaatgttgactactgcttgaaacaaccgaaaaggtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagcc |
25886333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 44349888 - 44350177
Alignment:
| Q |
21 |
cagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaagc |
120 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||| |||| |||| ||| |||| ||| ||||| | || ||||||| |
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| T |
44349888 |
cagataatggaagattaaccaatgagaatatatcatctattctcaaactaagttccattttttcctcactggtatttacaattcggaaaacagctgaaat |
44349987 |
T |
|
| Q |
121 |
agtgaacaaagaagcaatcacaatgtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaatc |
220 |
Q |
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|| ||||||||||||||||||| |||| || |||||| ||||| || | |||||||||| |||||| ||| |||||| ||| |||| |||||||||| |
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| T |
44349988 |
agcaaacaaagaagcaatcacaaagtttactatccaatagattcttagggataaagggtgtttggaagatttgaacttttcctcgtgtaacattagaatc |
44350087 |
T |
|
| Q |
221 |
actatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagcc |
310 |
Q |
| |
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||||| ||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44350088 |
actattactatgttgactacagcttgaaacaaccgaaaaggtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagcc |
44350177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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