View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_high_23 (Length: 317)
Name: NF6355_high_23
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 3076799 - 3076490
Alignment:
| Q |
1 |
gaactttgatgttttcatatctcttgggtaacataattttcattggctggttccacttaagtactttcatagccaaatcaaagaaagaaatagtagcttc |
100 |
Q |
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| T |
3076799 |
gaactttgatgttttcatatctcttgggtaacataattttcattggttggttccacttaagtactttcatagccaaatcaaagaaagaaatagtagcttc |
3076700 |
T |
|
| Q |
101 |
tcaatgaaagtacannnnnnnnnnnncctacttcaggaaattggagttggtggtttattgacatgttgatactctcatgtccccaaacattaaagtcatg |
200 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
3076699 |
tcaatgaaagtacattttttatttttcctacttcaggaaattggagctggtggtttgttggcatgttgatactctcatggccccaaacattaaagtcatg |
3076600 |
T |
|
| Q |
201 |
taggcacgtgctcatttcaactagtgttaatcaccaccaatggcttgtttgcaaagtccttttgcatttaatattttgtagcatgcatgcactattatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3076599 |
taggcacgtgctcatttcaactagtgttaatcaccaccaatggcttgtttgcaaagtccttttgcatttaatattttgtagcatgcatgcactattatat |
3076500 |
T |
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| Q |
301 |
catattcttc |
310 |
Q |
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|||||||||| |
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| T |
3076499 |
catattcttc |
3076490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 127 - 281
Target Start/End: Original strand, 3318982 - 3319132
Alignment:
| Q |
127 |
cctacttcaggaaattggagttggtggtttattgacatgttgatactctcatgtccccaaacattaaagtcatgtaggcacgtgctcatttcaactagtg |
226 |
Q |
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||||||| |||||| ||||||| ||||||| || |||| ||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||| |
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| T |
3318982 |
cctactttaggaaactggagttagtggtttgctggcatgctgatactctcatggtcccaaacttaaaactcatgtaggcacgtgctcatttcaactagtg |
3319081 |
T |
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| Q |
227 |
ttaatcaccaccaatggcttgtttgcaaagtccttttgcatttaatattttgtag |
281 |
Q |
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| T |
3319082 |
tcaatcaccactaa----tagtttgcaatgcccttttgcatttaatattttgtag |
3319132 |
T |
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