View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_high_25 (Length: 296)
Name: NF6355_high_25
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 6093254 - 6092990
Alignment:
| Q |
15 |
tatacttaatgattgataatttaatatgggacctgaaaaagtttacatttattttaactacagttaatgattagtaaccttactttttcgaaattgttta |
114 |
Q |
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| T |
6093254 |
tatacttaatgattgataatttaatatgggacctgaaaaagtttacatttattttaactacagttaatgattagtaaccttacttttttgaaattgttta |
6093155 |
T |
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| Q |
115 |
tttcacttcttgttggatnnnnnnnnnnnnnnnnnnnnnnggtggaacatgtcatgtaaacctcgtaaagagagattgatgaggctcccaaaagaggttt |
214 |
Q |
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| T |
6093154 |
tttcacttcttgttggataaaaataataaaaaatgaaaaaggtggaacatgtcatgtaaacctcgtaaagagagattgatgaggctcccaaaagaggttt |
6093055 |
T |
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| Q |
215 |
tggggtttggagggatgagtgttgagaagggtaaaatcagcctttctttcttctttggttagtct |
279 |
Q |
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| T |
6093054 |
tggggtttggagggatgagtgttgagaagggtaaaatcagcctttctttcttctttggttagtct |
6092990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 4514152 - 4514119
Alignment:
| Q |
33 |
atttaatatgggacctgaaaaagtttacatttat |
66 |
Q |
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| T |
4514152 |
atttaatatgggacctgaaaaagttaacatttat |
4514119 |
T |
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