View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6355_high_26 (Length: 291)
Name: NF6355_high_26
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_high_26 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 32310453 - 32310181
Alignment:
| Q |
1 |
tgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgtcccttgaaagtcgtacagcctttgctgaatgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
32310453 |
tgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgttccttgaaagtcgtacagcctttgctgaatgaa |
32310354 |
T |
|
| Q |
101 |
atcgcaaccgatttttccaatgttgtgtcctcctgtagattatcaagaaaccaacagatctcattagccttattcaaggttgtaaaaaataagcgagatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||| |
|
|
| T |
32310353 |
atcgcaaccgatttttccaatgttgtgtcctcctttagattatcaagaaaccaacagatctcattagccttattcaaggttttaaaaaatgtgtgatatc |
32310254 |
T |
|
| Q |
201 |
acaatattagctacgacatcagggtttttgatgtctttgtgaccacagttgaggctgcatcaggctcaacagt |
273 |
Q |
| |
|
||||| | ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32310253 |
acaatctcagctacgacatcaaggtttttcatgtctttgtgaccacagttgaggctgcatcaggctcaacagt |
32310181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 32564367 - 32564639
Alignment:
| Q |
1 |
tgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgtcccttgaaagtcgtacagcctttgctgaatgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
32564367 |
tgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgttccttgaaagtcgtacaacctttgctgaatgaa |
32564466 |
T |
|
| Q |
101 |
atcgcaaccgatttttccaatgttgtgtcctcctgtagattatcaagaaaccaacagatctcattagccttattcaaggttgtaaaaaataagcgagatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||| |
|
|
| T |
32564467 |
atcgcaaccgatttttccaatgttgtgtcctcctttagattatcaagaaaccaacagatctcattagccttattcaaggttttaaaaaatgtgtgatatc |
32564566 |
T |
|
| Q |
201 |
acaatattagctacgacatcagggtttttgatgtctttgtgaccacagttgaggctgcatcaggctcaacagt |
273 |
Q |
| |
|
||||| | ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32564567 |
acaatctcagctacgacatcaaggtttttcatgtctttgtgaccacagttgaggctgcatcaggctcaacagt |
32564639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 32786822 - 32787094
Alignment:
| Q |
1 |
tgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgtcccttgaaagtcgtacagcctttgctgaatgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
32786822 |
tgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatacttgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaaagaa |
32786921 |
T |
|
| Q |
101 |
atcgcaaccgatttttccaatgttgtgtcctcctgtagattatcaagaaaccaacagatctcattagccttattcaaggttgtaaaaaataagcgagatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | | |||| |
|
|
| T |
32786922 |
atcgcaaccgatttttccaatgttgtgtcctcctgtagtttatcaagaaaccaacagatctcattagccttattcaaggttttaaaaaatatgtgggatc |
32787021 |
T |
|
| Q |
201 |
acaatattagctacgacatcagggtttttgatgtctttgtgaccacagttgaggctgcatcaggctcaacagt |
273 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32787022 |
acaatctcagctacgacatcagggtttttgatgtctttgtgaccacagttgaggctggatcaggctcaacagt |
32787094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 32814030 - 32814307
Alignment:
| Q |
1 |
tgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgtcccttgaaagtcgtacagcctttgctgaatgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
32814030 |
tgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgttccttgaaagtcgtacaacctttgctgaatgaa |
32814129 |
T |
|
| Q |
101 |
atcgcaaccgatttttccaatgttgtgtcctcctgtagattatcaagaaaccaacagatctcattagccttattcaaggttgtaaaaaataagcgagatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |||||| |
|
|
| T |
32814130 |
atcgcaaccgatttttccaatgttgtgtcctcctttaaattatcaagaaaccaacagatctcattagccttatacaaggttttaaaaaatgtgtgagatc |
32814229 |
T |
|
| Q |
201 |
acaat----atta-gctacgacatcagggtttttgatgtctttgtgaccacagttgaggctgcatcaggctcaacagt |
273 |
Q |
| |
|
||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32814230 |
acaatctcaattacgatacgacatcagggtttttgatgtctttgtgaccacagttgaggctgcatcaggctcaacagt |
32814307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 273
Target Start/End: Complemental strand, 32306319 - 32306048
Alignment:
| Q |
2 |
gtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgtcccttgaaagtcgtacagcctttgctgaatgaaa |
101 |
Q |
| |
|
||||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
32306319 |
gtcaggacagtttagtctcatcagactgaaaaaatcgagaggtatactcgggtctggttgccctgttccttgaaagtcgtacaacctttgctgaatgaaa |
32306220 |
T |
|
| Q |
102 |
tcgcaaccgatttttccaatgttgtgtcctcctgtagattatcaagaaaccaacagatctcattagccttattcaaggttgtaaaaaataagcgagatca |
201 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| || ||||||||||| ||||| || | ||||||| |
|
|
| T |
32306219 |
tcacaaccgatttttccaaggttgtgtcctcctgtatattatccagaaaccaacagatctcattaaccctattcaaggtttgaaaaattacgtgagatca |
32306120 |
T |
|
| Q |
202 |
caatattagctacgacatcagggtttttgatgtctttgtgaccacagttgaggctgcatcaggctcaacagt |
273 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
32306119 |
caatctcagctacgacatcagggtttttgatgtctttgcgaccacaattgaggctgcatcaggctcaacagt |
32306048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 28214383 - 28214644
Alignment:
| Q |
1 |
tgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgtcccttgaaagtcgtacagcctttgctgaatgaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28214383 |
tgtcaggacagttttgcctcatctgactaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaatgaa |
28214482 |
T |
|
| Q |
101 |
atcgcaaccgatttttccaatgttgtgtcctcctgtagattatcaagaaaccaacagatctcattagccttattcaaggttgtaaaaaataagcgagatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | ||||||||||| || ||| ||| | |||| |
|
|
| T |
28214483 |
atcgcaaccgatttttccaatgttgtgttctcctttagattatcaagaaaccaacagatctcattagtcatattcaaggttttataaa--aagtgtgatc |
28214580 |
T |
|
| Q |
201 |
acaatattagctacgacatcagggtttttgatgtctttgtgaccacagttgaggctgcatcagg |
264 |
Q |
| |
|
||| | |||| |||||||| ||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
28214581 |
gtaatttcagctgcgacatcatggtttttgaagtctttgtgaccacagttgaggtcgcatcagg |
28214644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 28221901 - 28221640
Alignment:
| Q |
1 |
tgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgtcccttgaaagtcgtacagcctttgctgaatgaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
28221901 |
tgtcaggacagttttgcctcatctgactgaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagtcgtagagcctttgctgaatgaa |
28221802 |
T |
|
| Q |
101 |
atcgcaaccgatttttccaatgttgtgtcctcctgtagattatcaagaaaccaacagatctcattagccttattcaaggttgtaaaaaataagcgagatc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| | ||||||||||| || ||| ||| | |||| |
|
|
| T |
28221801 |
atcgcaacagatttttccaatgttgtgtgcaccttcagattatcaagaaaccaacagatctcattagtcatattcaaggttttataaa--aagtgtgatc |
28221704 |
T |
|
| Q |
201 |
acaatattagctacgacatcagggtttttgatgtctttgtgaccacagttgaggctgcatcagg |
264 |
Q |
| |
|
|||| | |||| |||||||| ||||||||| |||| |||| |||||||||||| |||||||| |
|
|
| T |
28221703 |
gcaatttcagctgcgacatcatggtttttgaagtctctgtggccacagttgaggtcgcatcagg |
28221640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 32316684 - 32316568
Alignment:
| Q |
35 |
atcgagaggtatactcggatctggttgccctgtcccttgaaagtcgtacagcctttgctgaatgaaatcgcaaccgatttttccaatgttgtgtcctcct |
134 |
Q |
| |
|
||||||||||||| ||| ||| |||| | ||| |||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32316684 |
atcgagaggtatattcgagtctagttgtcatgttcctttaaagtcgtacaacctttgctaaatgaaatcgcaaccgattttttcaatgttgtgtcctcct |
32316585 |
T |
|
| Q |
135 |
gtagattatcaagaaac |
151 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
32316584 |
ttatattatcaagaaac |
32316568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 28174700 - 28174569
Alignment:
| Q |
1 |
tgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatac-tcggatctggttgccctgtcccttgaaagtcgtacagcctttgctgaatga |
99 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| |||| ||||| | | ||||||||| |||| |||| ||||| |||||| ||||| ||| | |
|
|
| T |
28174700 |
tgtctggacagtttagcctcatctgactaagaaaatcaagagctatacgacaggtctggttgcgctgttcctttaaagttgtacagactttgtcaaatca |
28174601 |
T |
|
| Q |
100 |
aatcgcaaccgatttttccaatgttgtgtcct |
131 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||| |
|
|
| T |
28174600 |
aatcacaactgattttgccaatgttgtgtcct |
28174569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32317420 - 32317376
Alignment:
| Q |
1 |
tgtcaggacagtttagcctcatctgactgagaaaatcgagaggta |
45 |
Q |
| |
|
|||||||||| ||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
32317420 |
tgtcaggacaattttgcctcatatgacttagaaaatcgagaggta |
32317376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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