View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_high_34 (Length: 241)
Name: NF6355_high_34
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4174651 - 4174870
Alignment:
| Q |
1 |
atttgaacaataaactaagtaatttaactgtatatgcatgtagttagaagtaagaacctggagatgaactattgaaggtgacaaaccaatacactttggt |
100 |
Q |
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| T |
4174651 |
atttgaacaataaactaagtaatttaactgtatatgcatgtagttagaagtaagaacctggagatgaactattgaaggtgacaaaccaatacactttggt |
4174750 |
T |
|
| Q |
101 |
aggagaaacaggaacatatgctgcacgtaacccttttccaaagatgtaattcacccgtggctcaaaaggttgtccatctgaataggaggcaagtccacgg |
200 |
Q |
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| T |
4174751 |
aggagaaacaggaacatatcctgcacgtaacccttttccatagatgtaattcacccgtagctcaaaaggttgtccatctgaataggaggcaagtccacgg |
4174850 |
T |
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| Q |
201 |
aaagcacaataaccaacgta |
220 |
Q |
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| T |
4174851 |
aaagcacaataaccaacgta |
4174870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 48 - 223
Target Start/End: Original strand, 4170703 - 4170878
Alignment:
| Q |
48 |
aagtaagaacctggagatgaactattgaaggtgacaaaccaatacactttggtaggagaaacaggaacatatgctgcacgtaacccttttccaaagatgt |
147 |
Q |
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|||||| |||||||||||||||| |||||| || ||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||| |||||| |
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| T |
4170703 |
aagtaacaacctggagatgaactgttgaagcagataaaccaatagactttggttggagaaacaggaacatatcctgcgcgtaacccttttccatagatgt |
4170802 |
T |
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| Q |
148 |
aattcacccgtggctcaaaaggttgtccatctgaataggaggcaagtccacggaaagcacaataaccaacgtactt |
223 |
Q |
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||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
4170803 |
aattcacccgtggttgaaaaggttgtccgtctgaataggaggcaagtccacggaaagcacaatgaccaacgaactt |
4170878 |
T |
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