View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_high_38 (Length: 228)
Name: NF6355_high_38
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 44689692 - 44689910
Alignment:
| Q |
1 |
ttgtattaaaccaacatcttttacttagtcatagcaacaaatttttattgaaagaatgaatagccaataatgcaggtcattttgtaccaaacaaaaaaca |
100 |
Q |
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| T |
44689692 |
ttgtattaaaccaacatcttttacttagtcatagcaacaaatttttactgaaagaatgaatagccaataatgcaggtcattttgtaccaaacaaaaaaga |
44689791 |
T |
|
| Q |
101 |
tgattatacaagtatgctaannnnnnngagttagacatatacctctcacaagggatcagtttaatcaggtaaacttaacttatcatggtactaaaaagat |
200 |
Q |
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| T |
44689792 |
tgattatacaagtatgctaatttttttgagttagacatatacctctcacaagggatcagtttaatcaggtaaacttaacttatcatggtactaaaaagat |
44689891 |
T |
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| Q |
201 |
gtttccccgacagtataat |
219 |
Q |
| |
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| T |
44689892 |
gtttccccgacagtgtaat |
44689910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 44680429 - 44680645
Alignment:
| Q |
1 |
ttgtattaaaccaacatcttttacttagtcatagcaacaaatttttattgaaagaatgaatagccaataatgcagg---tcattttgtaccaaacaaaaa |
97 |
Q |
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|||| ||||||||||||||||||||||||| |||||| |||||| || ||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
44680429 |
ttgtgttaaaccaacatcttttacttagtcctagcaa--aattttgctt-aaagaatgaggagccaataatgcagaaaatcattttgtaccaaacaaaaa |
44680525 |
T |
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| Q |
98 |
acatgattatacaagtatgctaannnnnnngagttagacatatacctctcacaagggatcagtttaatcaggtaaacttaacttatcatggtactaaaaa |
197 |
Q |
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| T |
44680526 |
acttgattatacaagtatgcttattttt--gagttagacacataactctcaccagggctcaatttaatcaggtaaacttaacttatcatggtactaaaaa |
44680623 |
T |
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| Q |
198 |
gatgtttccccgacagtataat |
219 |
Q |
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| T |
44680624 |
gatgtttccccgacagtgtaat |
44680645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 214
Target Start/End: Complemental strand, 41983801 - 41983667
Alignment:
| Q |
76 |
gtcattttgtaccaaacaaaaaacatgattatacaagtatgctaannnnnnngagttagacatatacctctcacaagggatcagtttaatcaggtaaact |
175 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| || ||||| ||| |||| ||||| |||| ||| |||||| || ||| | |
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| T |
41983801 |
gtcattttgtaccaaacaaaaaacttgattatacaagtatgcaaattttta--agttaaacacatac--ctcacgagggctcaatttaattagataagca |
41983706 |
T |
|
| Q |
176 |
taacttatcatggtactaaaaagatgtttccccgacagt |
214 |
Q |
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| T |
41983705 |
taacttatcgtggtactaaaaagatatttccccaacagt |
41983667 |
T |
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