View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6355_low_11 (Length: 399)
Name: NF6355_low_11
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 5909694 - 5909322
Alignment:
| Q |
16 |
attttttggagtaaatgtagaccaatgttggagatttttagatgtgatgacttggttaatcatgaaggtgattggtggttttttgaggttgatgtaaaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5909694 |
attttttggagtaaatgtagaccaatgttggagatttttagatgtgatgacttggttaatcatgaaggtgattggtggttttttgaggttgatgtaaaga |
5909595 |
T |
|
| Q |
116 |
gattggaacagaaagtttctttgcctgttgggtcatgtaatttagctttgcctctatgggaacaaggtatgttatcttccataatattgtagtttttcat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5909594 |
gattggaacagaaagtttctttgcctgttgggtcatgtaatttagctttgcctatatgggaacaaggtatgttatcttccataatattgtagtttttcat |
5909495 |
T |
|
| Q |
216 |
attttgtttagcaaaatttgcattacactggcaaaaatcaagactagtcaagtctgtattgcttgactagcaagtaatctcaatataaatgagttgtaac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5909494 |
attttgtttagcaaaatttgcattacactggcaaaaatcaagactagtcaagtctgtattgcttgactagcaagtaatctcaatataaatgagttgtaac |
5909395 |
T |
|
| Q |
316 |
agatttacatcactaatgagatcagttttacaacacatacattcgtctctaaactctcatcatcttaattcat |
388 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5909394 |
agatttaaatcactaatgagatcagttttacaacacatacattcgtctctaaactctcatcatcttaattcat |
5909322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 5914188 - 5914020
Alignment:
| Q |
19 |
ttttggagtaaatgtagaccaatgttggagatttttagatgtgatgacttggttaatcatgaaggtgattggtggttttttgaggttgatgtaaagagat |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||| ||||||||||||| | |
|
|
| T |
5914188 |
ttttggagtaaatgtagaccaatgttagagatttttagatgtgatgatttggttaaacatgaaggtgattggtggttttatgaagttgatgtaaagaagt |
5914089 |
T |
|
| Q |
119 |
tggaacagaaagtttctttgcctgttgggtcatgtaatttagctttgcctctatgggaacaaggtatgt |
187 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
5914088 |
tggagcagaaaatttctttgcctgttgggtcttgcaatttggctttacctctatgggaacaaggtatgt |
5914020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 390
Target Start/End: Original strand, 32962592 - 32962705
Alignment:
| Q |
278 |
ttgactagcaagtaatctcaatataaatgagttgtaacagatttacat-cactaatgagatcagttttacaacacatacattcgtctctaaactctcatc |
376 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||| ||| ||| || | |||| || ||||||||||||||||||||| ||||||| || |||| |
|
|
| T |
32962592 |
ttgactagcaagtaatcttaatataaataagttgtaactatttttcattcattgatgaaattagttttacaacacatacattctcctctaaattcccatc |
32962691 |
T |
|
| Q |
377 |
atcttaattcatct |
390 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
32962692 |
atattaattcatct |
32962705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 388
Target Start/End: Complemental strand, 35005606 - 35005478
Alignment:
| Q |
260 |
tagtcaagtctgtattgcttgactagcaagtaatctcaatataaatgagttgtaacag-atttacatcactaatgagatcagttttacaacacatacatt |
358 |
Q |
| |
|
|||| |||| ||| ||||||||||| ||||||||| |||||||| ||||||||||| ||| ||| |||||||||||||| ||| ||||| |||||| |
|
|
| T |
35005606 |
tagttaagtttgttttgcttgactaataagtaatctacatataaataagttgtaacagttttttcattactaatgagatcag-tttgcaacatttacatt |
35005508 |
T |
|
| Q |
359 |
cgtctctaaactctcatcatcttaattcat |
388 |
Q |
| |
|
| | ||||||||||||||| ||||||||| |
|
|
| T |
35005507 |
cttatctaaactctcatcaagttaattcat |
35005478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University