View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_low_13 (Length: 391)
Name: NF6355_low_13
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 457101 - 457277
Alignment:
| Q |
11 |
cacagagctagttactaaggttatcatttatcaaggagatcgattgggtggattcggtctagagataggtaaataaaacaaaactgaactcatgaaaata |
110 |
Q |
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| T |
457101 |
cacagagcttgttactaaggttatcatttatcaaggagatcgattgggtggattcggtctagagataggtaaataaaacaaaactgaactcatgaaaata |
457200 |
T |
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| Q |
111 |
gcttatgaccatgccataagccattttcacaacttctctatactagtatctcaaacgtttatgttaatgcgaaagtt |
187 |
Q |
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| T |
457201 |
gcttatgaccatgccataagccattttcacaacgtctctatactagtatctcaaacgtttatgttaatgcgaaagtt |
457277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 246 - 373
Target Start/End: Original strand, 457336 - 457463
Alignment:
| Q |
246 |
tgttaagaaagaaacacaatttgatttgatataaccttaccctataattattccccaggttccagcttacgcaagccatcctaattatatatcattgtca |
345 |
Q |
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| T |
457336 |
tgttaaaaaagaaacacaatttgatttgatataaccttaccctataattattccccaggttccagcttacgcaagccatcctaattatatatcattgtca |
457435 |
T |
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| Q |
346 |
gcttggatgtgtttaatttcaacattac |
373 |
Q |
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| T |
457436 |
gcttggatgtgtttaatttcaacattac |
457463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 449115 - 449192
Alignment:
| Q |
296 |
ttccccaggttccagcttacgcaagccatcctaattatatatcattgtcagcttggatgtgtttaatttcaacattac |
373 |
Q |
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| T |
449115 |
ttcctcaggttccatcttacgcaagccatcctaattatttatcattgtcagcctggatgtgtataatgtcaacattac |
449192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 371
Target Start/End: Original strand, 480523 - 480593
Alignment:
| Q |
301 |
caggttccagcttacgcaagccatcctaattatatatcattgtcagcttggatgtgtttaatttcaacatt |
371 |
Q |
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| T |
480523 |
caggttccagcttatgcaagccatcctaattacttgtcatttacagcatggatgtgtttaatgtctacatt |
480593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 373
Target Start/End: Original strand, 475060 - 475132
Alignment:
| Q |
301 |
caggttccagcttacgcaagccatcctaattatatatcattgtcagcttggatgtgtttaatttcaacattac |
373 |
Q |
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| T |
475060 |
caggttccagcttatgcaagtcatcccaattatttatcactttcagcatggatgtgtttcatggcaacattac |
475132 |
T |
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