View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_low_14 (Length: 382)
Name: NF6355_low_14
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 55339627 - 55340012
Alignment:
| Q |
19 |
atcagtagttgtttgatgtagcctattcagtttatgatgtataaaacttattttgaaggttccgcatgaaatggtatcaatgtcgcatcacctttaacat |
118 |
Q |
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| T |
55339627 |
atcagtagttgtttgatgtagcctattcagtttatgatttataaaacttgtgttgaaggttccgtatgaaatggtatcaatgtcgcatcacctttaacat |
55339726 |
T |
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| Q |
119 |
aactgggaacatttttaatggcctagacaatttttataagtcatttcagaagtcagaacaaagaaaaaagcagcagcatcaatcaacacttcgtaacact |
218 |
Q |
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| T |
55339727 |
aactgtgaacatttttaatggcctagacaatttttaggagtcatttcagaagtcagaacaaagaaaaaagcagcagcatcaatcaacacttcgtaacact |
55339826 |
T |
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| Q |
219 |
acgacaagttgttgtatgaggaaaaccaaaaatggatatgacattgttggtttgctgaatatctgtttttatt----------------------gttag |
296 |
Q |
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| T |
55339827 |
acgactagttgttgtacgaggaaaaccaaaaatggatatgacattgttggtttgctgaatatctgtttttgttgttggagttcccccagttgtttgttag |
55339926 |
T |
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| Q |
297 |
tttgtttcttaggccttaagaaatttgatattactttggcccttagtgtttgttagtttcttttc-ttgttgtctgtgctcctcct |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | || ||||||| |
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| T |
55339927 |
tttgtttcttaggccttaagaaatttgatattactttggcccttggtgtttgttagtttcttttcattgttgtgtatgatcctcct |
55340012 |
T |
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