View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_low_15 (Length: 374)
Name: NF6355_low_15
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 33552692 - 33552338
Alignment:
| Q |
1 |
attattctgctcaattagatcctttgtgttttagatcaatactgcataaatatgaaacttcatggcgagattaagacaatgcagtgagtttgaataacaa |
100 |
Q |
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| T |
33552692 |
attactctcctcaattagatc-tttatgttttagatcaatactgcataaatatgaaacttcatggcgagattaagacaatgcagtgagtttgaataacaa |
33552594 |
T |
|
| Q |
101 |
acaagctccgtaattttcatttcgctagccaaaatgagagcttggtaaattgcaaataattcaacatgaagaatatcaattgaattatgaatgaatcata |
200 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33552593 |
acaagctccgtaatttccatttccctagccaaaatgagagcttggtaaattgcaaataattcaacatgaagaatatcaattgaattatgaatgaatcata |
33552494 |
T |
|
| Q |
201 |
aaaatcatcataattagaagccaacattattacacaaaagaccgccatatccatctcttgttttaacatattatgtttcgatgacgtcaagcataccaaa |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||||||||| |||||| |
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| T |
33552493 |
aaaatcctcataattagaagccaacattattacacaaaagaccgccatatccatctcttgtttaaatatattatgtcttgatgacgtcaagcccaccaaa |
33552394 |
T |
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| Q |
301 |
ttgttgcaacaaagatgaaggaatgaaagcttttggttcaaacaataagagtaaat |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33552393 |
ttgttgcaacaaagatgaaggaatgaaagcttttggttcaaacaataagagtaaat |
33552338 |
T |
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