View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6355_low_16 (Length: 368)

Name: NF6355_low_16
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6355_low_16
NF6355_low_16
[»] chr4 (34 HSPs)
chr4 (14-344)||(7907891-7908221)
chr4 (14-340)||(7877290-7877613)
chr4 (14-340)||(7774014-7774337)
chr4 (14-293)||(7771021-7771294)
chr4 (14-293)||(7789706-7789979)
chr4 (14-331)||(7904611-7904923)
chr4 (19-293)||(7822586-7822854)
chr4 (194-322)||(45372419-45372547)
chr4 (14-293)||(7237908-7238181)
chr4 (19-293)||(7800254-7800522)
chr4 (186-293)||(7813097-7813204)
chr4 (181-329)||(45366567-45366718)
chr4 (193-294)||(48156788-48156889)
chr4 (193-293)||(49044590-49044690)
chr4 (193-287)||(48891032-48891126)
chr4 (193-291)||(49041499-49041597)
chr4 (197-285)||(48898347-48898438)
chr4 (200-335)||(48870117-48870252)
chr4 (200-335)||(48885803-48885938)
chr4 (210-293)||(49048977-49049060)
chr4 (16-257)||(7765274-7765509)
chr4 (194-322)||(48862829-48862960)
chr4 (228-340)||(48902520-48902632)
chr4 (193-287)||(48170947-48171044)
chr4 (193-338)||(48735673-48735821)
chr4 (203-344)||(45385158-45385299)
chr4 (193-258)||(50251169-50251234)
chr4 (194-258)||(37827356-37827420)
chr4 (193-331)||(47207513-47207651)
chr4 (181-285)||(48148031-48148138)
chr4 (197-258)||(48875498-48875559)
chr4 (195-258)||(7786095-7786158)
chr4 (194-293)||(50668660-50668759)
chr4 (199-288)||(33134190-33134282)
[»] chr8 (6 HSPs)
chr8 (209-303)||(12199914-12200008)
chr8 (209-303)||(12444342-12444436)
chr8 (193-293)||(15348479-15348579)
chr8 (205-303)||(12194908-12195006)
chr8 (205-303)||(12439336-12439434)
chr8 (190-284)||(4032274-4032368)
[»] chr1 (4 HSPs)
chr1 (181-288)||(24309799-24309906)
chr1 (181-293)||(24340031-24340143)
chr1 (201-293)||(24322079-24322171)
chr1 (200-270)||(24366795-24366865)
[»] chr3 (5 HSPs)
chr3 (193-319)||(47452268-47452394)
chr3 (202-293)||(11006332-11006423)
chr3 (100-293)||(11024808-11024998)
chr3 (116-293)||(11015812-11015986)
chr3 (14-47)||(47452095-47452128)
[»] scaffold0508 (1 HSPs)
scaffold0508 (181-270)||(11902-11991)
[»] chr5 (4 HSPs)
chr5 (193-288)||(29712830-29712925)
chr5 (193-285)||(29687676-29687768)
chr5 (194-258)||(1812077-1812141)
chr5 (193-258)||(29695804-29695869)
[»] chr6 (2 HSPs)
chr6 (202-282)||(21980014-21980094)
chr6 (202-293)||(21015393-21015484)


Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 7908221 - 7907891
Alignment:
Q  14 agtataaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  7908221 agtataaaccctctacatgaacctctaatttcaaccggaaaatgagatcgggtaagcgaaaaagtaatgttgagtgaagcaggatcatcatcgttaagaa 7908122  T
Q  114 atgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908121 atgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatt 7908022  T
Q  214 tgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatc 313  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  7908021 tgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctcagtaggatctggaaaatc 7907922  T
Q  314 aattcatgatgaagatacggcagtgtcgtcg 344  Q
    ||||||||| |||||||||||||||||||||    
T  7907921 aattcatgaggaagatacggcagtgtcgtcg 7907891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 340
Target Start/End: Complemental strand, 7877613 - 7877290
Alignment:
Q  14 agtataaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaa 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||    |||  ||||| ||||||| |||||||||||||||||| |||||||||    
T  7877613 agtataaaccctctgcatgaacctctaatttcaaccggaaaataaggtccacgaagtgaaaaattaatgttcagtgaagcaggatcatcatcgttaagaa 7877514  T
Q  114 atgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatt 213  Q
    |||||| |||| |||| |||||| ||||||||||||||| ||||||  |||||||||||| ||    |||  |||  | ||| |||||||||||||||||    
T  7877513 atgcttcaaaacctattgatcgaatttcatgagatagaggtgatatgcacataattctaggagt---gtgcgttgtggtggtgagttgaaaatgtgaatt 7877417  T
Q  214 tgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatc 313  Q
    |||||||| |||| ||||||||||||||||||||  ||||||||   | |||||||||  ||||||||||||| ||||||| |  ||||| |||| ||||    
T  7877416 tgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccagcaaccaaatcaggatttggataatc 7877317  T
Q  314 aattcatgatgaagatacggcagtgtc 340  Q
    ||||||||| ||||||||||| |||||    
T  7877316 aattcatgaggaagatacggccgtgtc 7877290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 340
Target Start/End: Original strand, 7774014 - 7774337
Alignment:
Q  14 agtataaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaa 113  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||   | |||| ||||| ||| ||| | |||||||| ||||||| |||||||||    
T  7774014 agtataaaccctctacacgaacctctaatttcagccggaaaataagattctggaagcgaaaaattaaggttcactgaagcagtatcatcatcgttaagaa 7774113  T
Q  114 atgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatt 213  Q
    |||||| |||| ||||||||||| ||||||||||||||| ||||||  ||||||||||   || || |||  |||  | ||| |||||||||||||||||    
T  7774114 atgcttcaaaacctatagatcgaatttcatgagatagagatgatatgcacataattct---aggagtgtgcgttgtggtggtgagttgaaaatgtgaatt 7774210  T
Q  214 tgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatc 313  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||| | |||||| |   ||||||||||||||||| || ||  | ||| || | ||||    
T  7774211 tgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccggcagccgcatcaagatttgaataatc 7774310  T
Q  314 aattcatgatgaagatacggcagtgtc 340  Q
    ||||||||| |||||||||||||||||    
T  7774311 aattcatgaggaagatacggcagtgtc 7774337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 7771294 - 7771021
Alignment:
Q  14 agtataaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaa 113  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||   | |||| ||||| ||| ||| | ||||||||||||||   |||||||||    
T  7771294 agtataaaccctctacacgaacctctaatttcaacaggaaaataagattctggaagcgaaaaattaaggttcactgaagcaggatcat---cgttaagaa 7771198  T
Q  114 atgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatt 213  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||  | | || |||| |   || |||| ||||||||| ||||||||||||||||||    
T  7771197 atgcttcaaaatctatagatcgaatttcatgagattgagttgatatgcataaaaatctaca---agtgtgtgttgcagaggcaagttgaaaatgtgaatt 7771101  T
Q  214 tgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 293  Q
    | |||| || ||| ||||||||||||||||||| |||||||||||  | ||||||| |  ||||||||||||||||||||    
T  7771100 ttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacc 7771021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 7789979 - 7789706
Alignment:
Q  14 agtataaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaa 113  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||||||   | |||| ||||| ||| ||| | |||||||||||||||   ||||||||    
T  7789979 agtataaaccctctacacgaacctctaatttaaacaggaaaataagattctggaagcgaaaaattaaggttcactgaagcaggatcatc---gttaagaa 7789883  T
Q  114 atgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatt 213  Q
    |||||| |||||||||||||| | ||||||||||| ||||||||||| | | || |||| |   || |||| |||| |||| ||||||||||||||||||    
T  7789882 atgcttcaaaatctatagatcaaatttcatgagattgagttgatatacataaaaatctaca---agtgtgtgttgcggaggcaagttgaaaatgtgaatt 7789786  T
Q  214 tgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 293  Q
    | |||| || ||| | ||||||| ||||||||| |||||||||||  | ||||||| |  ||||||||||||||||||||    
T  7789785 ttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacc 7789706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 7904923 - 7904611
Alignment:
Q  14 agtataaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaagccaaaaagt-aatgttgagtgaagcaggatcatcaccgttaaga 112  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||  || |||| ||||| | || |||   |||| || ||| ||||   ||||||    
T  7904923 agtataaaccctctacacgaacctctaatttcaactggaaaataagattcgggaagcgaaaaaattaaggttccatgaaccacgatgatca---ttaaga 7904827  T
Q  113 aatgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttt--tgcagaggtaagttgaaaatgtga 210  Q
    ||||||| ||||| || |||| || ||||||||||||||  ||||||  |||||||||||| ||     ||||   ||| | ||| ||||||||||||||    
T  7904826 aatgcttcaaaatataaagattgaatttcatgagatagatatgatatgcacataattctaggag-----tgttagctgcggcggtgagttgaaaatgtga 7904732  T
Q  211 atttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaa 310  Q
    ||||||||| || ||| |||||||||||||||||||| ||||||||||| | |||||||||  |||||||||||| ||||||||||  | ||| || | |    
T  7904731 atttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaaccacatcaagatttgaata 7904632  T
Q  311 atcaattcatgatgaagatac 331  Q
    ||||||||| || ||||||||    
T  7904631 atcaattcacgaggaagatac 7904611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 7822854 - 7822586
Alignment:
Q  19 aaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgct 118  Q
    |||||||| |||||| ||| |||||||||  ||||||||||||   | |||| | ||| ||| |||  |||||| | ||||||||   |||||  ||||     
T  7822854 aaaccctccacatgaccctataatttcaaaaggaaaataagatttaggaagcaagaaattaaggttcggtgaaggaagatcatca---ttaagccatgca 7822758  T
Q  119 ttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatttgcaa 218  Q
    | || ||||||||||||| |||||||||||| || |||||     |||||||||  || |   ||| |||||| ||| | |||||| |||||||||||||    
T  7822757 tcaacatctatagatcgaatttcatgagataaagatgataagcctataattctacgagta---tgtgttgcagtggtgaattgaaattgtgaatttgcaa 7822661  T
Q  219 aatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 293  Q
    | |||||| |||||||||||||||||||||| ||||||||| |||||||||||  |||| |||||||||||||||    
T  7822660 agtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacc 7822586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 194 - 322
Target Start/End: Original strand, 45372419 - 45372547
Alignment:
Q  194 gtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 293  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||| | |||||||||  ||||||||||||||||||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  294 acagtaggatctggaaaatcaattcatga 322  Q
      ||||| || || |  ||||||||||||    
T  45372519 ttagtagaatttgaatcatcaattcatga 45372547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 7237908 - 7238181
Alignment:
Q  14 agtataaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaa 113  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||   | || | ||||| ||  |||  ||||| ||||||||||   ||||||||    
T  7237908 agtataaaccctctacatgaacctctgatttcaacaggaaaataagattccgaaaacaaaaaattacggttctgtgaaccaggatcatc---gttaagaa 7238004  T
Q  114 atgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatt 213  Q
    |||||| |  ||| || |||||| |||||||||||| || ||||||  | | ||  |||  || |   ||  ||||||||||| |||| |||||||||||    
T  7238005 atgcttcaggatcgattgatcgaatttcatgagataaaggtgatatgcataaaaacctacgagta---tgcgttgcagaggtatgttggaaatgtgaatt 7238101  T
Q  214 tgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 293  Q
    |||||| || ||  ||||||||||||||||||| |||||||||||| | |||||||    |||||||||||| |||||||    
T  7238102 tgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacc 7238181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 7800522 - 7800254
Alignment:
Q  19 aaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgct 118  Q
    |||||||| |||||| ||| |||||||||  ||||||||||||   | |||| | ||| ||| |||  |||||| | ||||||||   |||||  ||||     
T  7800522 aaaccctccacatgaccctataatttcaaaaggaaaataagatttaggaagcaagaaattaaggttcggtgaaggaagatcatca---ttaagccatgca 7800426  T
Q  119 ttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatttgcaa 218  Q
    | || ||||||||||||| |||||||||||| || |||||     |||||||||  || |   ||| |||||| ||| | |||||| |||||||||||||    
T  7800425 tcaacatctatagatcgaatttcatgagataaagatgataagcctataattctacgagta---tgtgttgcagtggtgaattgaaattgtgaatttgcaa 7800329  T
Q  219 aatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 293  Q
    |  ||||| |||||| ||||||||||||||| ||||||||| |||||||||||  |||| |||||||||||||||    
T  7800328 agcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacc 7800254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 186 - 293
Target Start/End: Complemental strand, 7813204 - 7813097
Alignment:
Q  186 ttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcac 285  Q
    |||||| ||| | |||||| ||||| |||||||| |||||  |||||||||||||||||||||| ||||||||| |||||||||||  |||| |||||||    
T  7813204 ttgcagtggtgaattgaaattgtgactttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcac 7813105  T
Q  286 cggcaacc 293  Q
    ||||||||    
T  7813104 cggcaacc 7813097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 181 - 329
Target Start/End: Original strand, 45366567 - 45366718
Alignment:
Q  181 gtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagca---gagataagagaaaaccatgacttacaaacagacttgaaacgtgcaaga 277  Q
    ||||||||| | || |||||||||||||||||||||||| || | | ||   |||||||||||||||||  ||||||||||  |||||||||||  ||||    
T  45366567 gtgttttgcggcggaaagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataaga 45366666  T
Q  278 gacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagat 329  Q
    |||||||| || ||||  |||||||| ||||  |||||||||||| ||||||    
T  45366667 gacttcactggtaaccttagtaggatttggatcatcaattcatgaggaagat 45366718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 48156788 - 48156889
Alignment:
Q  193 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaac 292  Q
    ||||| ||||||||| |||||||||||||| | | | ||||||||||||||||| |||||||||||  |||||||||||  ||||||||||||||| |||    
T  48156788 ggtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaac 48156887  T
Q  293 ca 294  Q
    ||    
T  48156888 ca 48156889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 193 - 293
Target Start/End: Original strand, 49044590 - 49044690
Alignment:
Q  193 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaac 292  Q
    ||||| || |||||||||||||||||| ||||    ||||||||||||||||||| ||||||||||| |||||||||||  ||||||| |||| ||||||    
T  49044590 ggtaatttcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaac 49044689  T
Q  293 c 293  Q
    |    
T  49044690 c 49044690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 48891126 - 48891032
Alignment:
Q  193 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccg 287  Q
    ||||||||||||||| |||||||||||||| ||| | |||| |||||||||||| |||||||||||  | |||||||||  ||||||||| ||||    
T  48891126 ggtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccg 48891032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 193 - 291
Target Start/End: Original strand, 49041499 - 49041597
Alignment:
Q  193 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaa 291  Q
    |||||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||| |||||  | |||||||    |||||||||||| |||||    
T  49041499 ggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcactggcaa 49041597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 48898438 - 48898347
Alignment:
Q  197 agttgaaaatgtgaatttgcaaaatggggagca---gagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcac 285  Q
    ||||||||||||||||||||||| |||| | ||   |||||||| || ||||| |||||||||||| |||||||||||| ||||||||||||    
T  48898438 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcac 48898347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 200 - 335
Target Start/End: Complemental strand, 48870252 - 48870117
Alignment:
Q  200 tgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagta 299  Q
    ||||||||||||||||||||| ||||| | ||||||||| ||||||| |||||||||||  | ||||||||   |||||| |||||||| | || ||| |    
T  48870252 tgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagca 48870153  T
Q  300 ggatctggaaaatcaattcatgatgaagatacggca 335  Q
    | || || |  |||||||||||||| |||| |||||    
T  48870152 gaatttgaactatcaattcatgatgcagatgcggca 48870117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 200 - 335
Target Start/End: Complemental strand, 48885938 - 48885803
Alignment:
Q  200 tgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagta 299  Q
    ||||||||||||||||||||| ||||| | ||||||||| ||||||| |||||||||||  | ||||||||   |||||| |||||||| | || ||| |    
T  48885938 tgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagca 48885839  T
Q  300 ggatctggaaaatcaattcatgatgaagatacggca 335  Q
    | || || |  |||||||||||||| |||| |||||    
T  48885838 gaatttgaactatcaattcatgatgcagatgcggca 48885803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 49048977 - 49049060
Alignment:
Q  210 aatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 293  Q
    |||||||||||||||    ||||||||||||||||||| ||||||||||| |||||||||||  ||||||| ||||| ||||||    
T  49048977 aatttgcaaaatgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcaccagcaacc 49049060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 7765509 - 7765274
Alignment:
Q  16 tataaaccctctacatgaacctctaatttcaaccggaaaataaga-tcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaa 114  Q
    |||||| ||||||||||| ||| |||||||||  ||||||||||| || || |||  || |  ||| |||| ||||||||||| ||||   |||||||||    
T  7765509 tataaaacctctacatgaccctttaatttcaaagggaaaataagagtctgg-aagggaacagttaaagttgggtgaagcaggagcatc---gttaagaaa 7765414  T
Q  115 tgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaattt 214  Q
    ||| | |||||| || |||||| ||||| ||||||||| ||| ||  | | || ||||  ||    ||||||||||  | ||||||| ||||||||||||    
T  7765413 tgcatcaaaatcaattgatcgaatttcaggagatagagctgaaatgcataaaaatctacgagt---gtgttttgcatggttaagttggaaatgtgaattt 7765317  T
Q  215 gcaaaatggggagcagagataagagaaaaccatgacttacaaa 257  Q
    ||||| || ||| ||||||||| |||||||||| |||||||||    
T  7765316 gcaaagtgaggatcagagataatagaaaaccataacttacaaa 7765274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 322
Target Start/End: Complemental strand, 48862960 - 48862829
Alignment:
Q  194 gtaagttgaaaatgtgaatttgcaaaatggggagca---gagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggca 290  Q
    |||||||||||||||||||||||||| || ||| ||   ||||||||||||||||| ||||| |||||  | ||||||||   ||||||||||||||| |    
T  48862960 gtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggta 48862861  T
Q  291 accacagtaggatctggaaaatcaattcatga 322  Q
    |||  || |||||  |||  ||||||||||||    
T  48862860 accttagcaggattaggatgatcaattcatga 48862829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 340
Target Start/End: Complemental strand, 48902632 - 48902520
Alignment:
Q  228 cagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaag 327  Q
    |||| |||||||||||||| |||||||||||| | ||||||||    |||||||| |||||||||||| | |  || ||||  |||||||||||| | ||    
T  48902632 cagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatcaattcatgaggtag 48902533  T
Q  328 atacggcagtgtc 340  Q
    |||||||||||||    
T  48902532 atacggcagtgtc 48902520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 48170947 - 48171044
Alignment:
Q  193 ggtaagttgaaaatgtgaatttgcaaaatggggagca---gagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccg 287  Q
    ||||| ||||||||| ||||||||||| || ||| ||   |||||||||| |||||| |||||||||||| | |||||||||  ||||||||||||||    
T  48170947 ggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccg 48171044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 338
Target Start/End: Original strand, 48735673 - 48735821
Alignment:
Q  193 ggtaagttgaaaatgtgaatttgcaaaatggggagca---gagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggc 289  Q
    ||||| || ||||||||||||||||||||  | | ||   ||||||||||||||||| |||||||||||| | ||||||||   |||||||||||||||     
T  48735673 ggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggt 48735772  T
Q  290 aaccacagtaggatctggaaaatcaattcatgatgaagatacggcagtg 338  Q
    |||| ||| || || || |  ||||| |||||| | ||| |||||||||    
T  48735773 aacctcagaagaatttgaactatcaactcatgaggcagaaacggcagtg 48735821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 344
Target Start/End: Original strand, 45385158 - 45385299
Alignment:
Q  203 aaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtagga 302  Q
    |||||||||| |||||| |||| | | ||||  ||||||||||| ||||||||||| || |||||||||   |||||||| || || ||||  |||||||    
T  45385158 aaatgtgaatatgcaaagtgggtatcggagacgagagaaaaccaagacttacaaacggatttgaaacgtatgagagacttaactggtaaccttagtagga 45385257  T
Q  303 tctggaaaatcaattcatgatgaagatacggcagtgtcgtcg 344  Q
    | ||||  |||||||||| | | | || ||||||||||||||    
T  45385258 tttggatcatcaattcattaggcatatgcggcagtgtcgtcg 45385299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 50251169 - 50251234
Alignment:
Q  193 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaac 258  Q
    |||||||||||||||  |||||||| | |||||| ||||||||||||||||||| |||||| ||||    
T  50251169 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaac 50251234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 37827356 - 37827420
Alignment:
Q  194 gtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaac 258  Q
    |||||||||||||||||||||||||| | ||||  ||| |||||||  |||||||||||||||||    
T  37827356 gtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaac 37827420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 331
Target Start/End: Complemental strand, 47207651 - 47207513
Alignment:
Q  193 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaac 292  Q
    |||||||| |||||||||||| | |||||| ||  | ||||| |||||||| || ||||| ||||||  ||| ||||||  ||||||||||||||| |||    
T  47207651 ggtaagttcaaaatgtgaattagaaaaatgtgggtcggagatgagagaaaatcaagacttccaaacactcttaaaacgtataagagacttcaccggtaac 47207552  T
Q  293 cacagtaggatctggaaaatcaattcatgatgaagatac 331  Q
     | | ||||||   ||  |||||||||||| ||||||||    
T  47207551 tataataggattaagatgatcaattcatgaggaagatac 47207513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 48148031 - 48148138
Alignment:
Q  181 gtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagca---gagataagagaaaaccatgacttacaaacagacttgaaacgtgcaaga 277  Q
    |||||||| || ||| |||| ||||||||||||||| || || ||| ||   ||||||||||||||||| |||||||| ||| | ||||||||   ||||    
T  48148031 gtgttttgaagcggtgagttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataaga 48148130  T
Q  278 gacttcac 285  Q
    ||||||||    
T  48148131 gacttcac 48148138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 48875559 - 48875498
Alignment:
Q  197 agttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaac 258  Q
    ||||||||||||||||||| |||||||||  | ||||| ||||||||||| ||||| |||||    
T  48875559 agttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaac 48875498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 7786158 - 7786095
Alignment:
Q  195 taagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaac 258  Q
    ||||||| ||||||||||||||||| || ||| ||||||||| ||||| ||||  |||||||||    
T  7786158 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaac 7786095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 293
Target Start/End: Complemental strand, 50668759 - 50668660
Alignment:
Q  194 gtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 293  Q
    ||||||| |||||| ||||| ||||||| | || | ||||| ||||||||||| || ||||||||  |||||||||||  |||| | ||||| |||||||    
T  50668759 gtaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacc 50668660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 288
Target Start/End: Original strand, 33134190 - 33134282
Alignment:
Q  199 ttgaaaatgtgaatttgcaaaatggggagca---gagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccgg 288  Q
    ||||||||||||||||||||| || ||| ||   |||||||||||||| || | |||||||||  | ||||||||   |||||||||||||||    
T  33134190 ttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccgg 33134282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 12200008 - 12199914
Alignment:
Q  209 gaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggat 303  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||| | ||||||| |  |||||||||||||||||||| ||| |||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggat 12199914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 12444436 - 12444342
Alignment:
Q  209 gaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggat 303  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||| | ||||||| |  |||||||||||||||||||| ||| |||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggat 12444342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 193 - 293
Target Start/End: Complemental strand, 15348579 - 15348479
Alignment:
Q  193 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaac 292  Q
    ||||| |||||||||||||||||| || |  ||| ||||||||||||||||||| |||||||||||  | |||||||||  ||||||||||||||| |||    
T  15348579 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaac 15348480  T
Q  293 c 293  Q
    |    
T  15348479 c 15348479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 12195006 - 12194908
Alignment:
Q  205 atgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggat 303  Q
    ||||||||||||||| || ||| ||||||||||||| ||||||||||||||||   | ||||||| |  |||||||||||||||||||| ||| |||||    
T  12195006 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggat 12194908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 12439434 - 12439336
Alignment:
Q  205 atgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggat 303  Q
    ||||||||||||||| || ||| ||||||||||||| ||||||||||||||||   | ||||||| |  |||||||||||||||||||| ||| |||||    
T  12439434 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggat 12439336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 4032274 - 4032368
Alignment:
Q  190 agaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttca 284  Q
    |||||||| ||||||||| ||||||||||| || ||| |||| |||||||  ||||| || ||||||||| |||||||||||  |||||||||||    
T  4032274 agaggtaatttgaaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttca 4032368  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 181 - 288
Target Start/End: Complemental strand, 24309906 - 24309799
Alignment:
Q  181 gtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagac 280  Q
    |||| ||| ||| |||||||||||||||||||||||||| || | | |||||||||||||||||||| |||||||||| || ||||||||   |||||||    
T  24309906 gtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagac 24309807  T
Q  281 ttcaccgg 288  Q
    || |||||    
T  24309806 ttaaccgg 24309799  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 24340143 - 24340031
Alignment:
Q  181 gtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagac 280  Q
    |||| ||||||  |||| |||||| |||||||||||||| ||   | |||||||||| ||||||||||||||||||||||| ||||||||   |||||||    
T  24340143 gtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagac 24340044  T
Q  281 ttcaccggcaacc 293  Q
    || ||||| ||||    
T  24340043 ttaaccggtaacc 24340031  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 24322171 - 24322079
Alignment:
Q  201 gaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 293  Q
    |||| ||||||||||||||| | |||   ||||||||||||||||| |||||||||||  | ||||||||   ||||||||||||| ||||||    
T  24322171 gaaactgtgaatttgcaaaacgaggatttgagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaacc 24322079  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 270
Target Start/End: Complemental strand, 24366865 - 24366795
Alignment:
Q  200 tgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacg 270  Q
    ||||| |||||||||||||| |  |||   ||||||||||||||||||||||| |||||| | ||||||||    
T  24366865 tgaaactgtgaatttgcaaagtaaggatttgagataagagaaaaccatgacttgcaaacacatttgaaacg 24366795  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 319
Target Start/End: Original strand, 47452268 - 47452394
Alignment:
Q  193 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaac 292  Q
    |||||||| ||||||||  ||||||||  | ||| |||||||||||||||||||||||||| |||   ||||||| ||| ||||||||||||||||||||    
T  47452268 ggtaagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaac 47452367  T
Q  293 cacagtaggatctggaaaatcaattca 319  Q
    | ||  | ||||||||  |||||||||    
T  47452368 ctcaccaagatctggattatcaattca 47452394  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 11006332 - 11006423
Alignment:
Q  202 aaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 293  Q
    |||||| || |||||||| || ||| ||||||||||||  |||||||||||||||||| |||||||||||  ||| ||||||||||||||||    
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacc 11006423  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 293
Target Start/End: Original strand, 11024808 - 11024998
Alignment:
Q  100 atcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttttgcagaggtaagt 199  Q
    |||| |||||||  |||||| ||||||||| |||||||||||  ||| ||||||||| || |||| |||||||  ||    |||| |||||| || ||||    
T  11024808 atcatcgttaagcgatgcttcaaaatctatggatcgagtttccagagctagagttgacatgaacacaattctattagt---gtgtgttgcaggggaaagt 11024904  T
Q  200 tgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 293  Q
    | |||||| || |||||||| |   || ||||||||||||  |||||||||||||||||  | |||||||||   |||||||||||||| ||||    
T  11024905 tcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacc 11024998  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 293
Target Start/End: Original strand, 11015812 - 11015986
Alignment:
Q  116 gctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatttg 215  Q
    |||| |||||| || |||||||||||| ||| ||||||||| || |||| |||||||  ||    |||| |||||| || ||||| |||||| || ||||    
T  11015812 gcttcaaaatcaatggatcgagtttcaagagctagagttgacatgaacacaattctattagt---gtgtgttgcagtggaaagttcaaaatgcgattttg 11015908  T
Q  216 caaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 293  Q
    |||| |   || ||||||||||||  ||| |||||||||||||  | |||||||||   |||||||||||||| ||||    
T  11015909 caaagttatgatcagagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacc 11015986  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 47452095 - 47452128
Alignment:
Q  14 agtataaaccctctacatgaacctctaatttcaa 47  Q
    |||||||||||||||||||||||| |||||||||    
T  47452095 agtataaaccctctacatgaacctttaatttcaa 47452128  T

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Target: scaffold0508 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 11991 - 11902
Alignment:
Q  181 gtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacg 270  Q
    |||| ||| ||| |||||||||||||||||||||||||| ||   | ||||||||||||||||||||||||||||||| || ||||||||    
T  11991 gtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacg 11902  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 193 - 288
Target Start/End: Original strand, 29712830 - 29712925
Alignment:
Q  193 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccgg 288  Q
    |||||||||||||||||||||||| ||||  |    ||||||||||||||||||| ||||||||||  ||||||||||   |||||||||||||||    
T  29712830 ggtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 29712925  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 285
Target Start/End: Complemental strand, 29687768 - 29687676
Alignment:
Q  193 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcac 285  Q
    ||||||||||||||| ||||||||||| || ||   ||| || ||||||||||| |||||||||||| ||||||| |||  ||||||||||||    
T  29687768 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcac 29687676  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 1812141 - 1812077
Alignment:
Q  194 gtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaac 258  Q
    ||||||||||||||  |||||||||| ||||||   |||||||||||||||||| ||||||||||    
T  1812141 gtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaac 1812077  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 29695869 - 29695804
Alignment:
Q  193 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaac 258  Q
    ||||||||||||||||||||||||||| || ||   ||| |||||||| |||||| ||||||||||    
T  29695869 ggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaac 29695804  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 21980014 - 21980094
Alignment:
Q  202 aaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagactt 282  Q
    |||||||||||| ||||| | ||||  |||||| ||||||||||| |||||||||||| ||||||||||||  ||||||||    
T  21980014 aaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgtgagagagactt 21980094  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 293
Target Start/End: Complemental strand, 21015484 - 21015393
Alignment:
Q  202 aaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 293  Q
    |||||||||| ||||||| ||||    |||||||||||||||| || ||||||||||| |||||||||||  ||||||| | ||||| ||||    
T  21015484 aaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacc 21015393  T

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