View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_low_2 (Length: 525)
Name: NF6355_low_2
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 15 - 513
Target Start/End: Original strand, 41065217 - 41065715
Alignment:
| Q |
15 |
gaggaagttgtgtgaaagatcaactgcttcaagtttctcacagttagataattctgttggtatacttccatgaagttgattctgccaagcatagaagaga |
114 |
Q |
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| T |
41065217 |
gaggaagttgtgtgaaagatcaactgcttcaagtttctcacagttagataattctgttggtatacttccatgaagttgattctgccaagcatagaagaga |
41065316 |
T |
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| Q |
115 |
gtgagttccttcaagttccccataacacgtggaatctctccagtgaatttgttattatctaattcaagttgattcagcatggaaaaatttccaatatatg |
214 |
Q |
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| T |
41065317 |
gtgagttccttcaagttccccataacacgtggaatctctccagtgaatttgttattatctaattcaagttgattcagcatggaaaaatttccaatatatg |
41065416 |
T |
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| Q |
215 |
aaggtatttctccataaatgttattatcagacacaagaagttcctccaatgagagtagattactgagagacagaggtaactgaccaaccagagaattcaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41065417 |
aaggtatttctccataaatgttattatcagacacaagaagttcctccaatgagagtagattactgagagacaaaggtaactgaccaaccagagaattcaa |
41065516 |
T |
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| Q |
315 |
agaaaaatcaataacctttagatttgtacagtttccaagactttctggaatggttccagtgaaattgttctgccacagcaacactctcttgaggctttgc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41065517 |
agaaaaatcaataacctttagatttgtacagtttccaagactttctggaatggttccagtgaaattgttctgccacagcaacactctcttgaggctttgc |
41065616 |
T |
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| Q |
415 |
atggaacctaattcataaagaatgtttccagaaagctgattttcatacagaaacaaatcttccaaagaagaacagttttgaatctccagtggaatttga |
513 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41065617 |
atggaacctaattcatatagaatgtttccagaaaggtgattttcatacagaaacaaatcttccaaagaagaacagttttgaatctccagtggaatttga |
41065715 |
T |
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