View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_low_29 (Length: 257)
Name: NF6355_low_29
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 36960421 - 36960666
Alignment:
| Q |
1 |
cacttgcatctttcattacagatgctttagcaataa---attgaaagatgcaagtaaaataaatcatcataatacatcagtgccacaaataattttaagt |
97 |
Q |
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| T |
36960421 |
cacttgcatctttcattacagatgctttagcaataatctattgaaagatgcaagtaaaataaatcatcataatacatcagtgccacaaataattttaagt |
36960520 |
T |
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| Q |
98 |
ctttaatatgtattcctctnnnnnnnngtcttcaatatgtattgattcaatgcttttttcttttaccttcaacatcaaatgtaaaaactaagggcacaac |
197 |
Q |
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| T |
36960521 |
ctttaatatgtattcctctaaaaaaaagtcttcaatatgtattgatccaatgcttttttcttttaccttcaacatcaaatgtaaaaactaagggcgcaac |
36960620 |
T |
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| Q |
198 |
acaagtgctgagaagccggcctcttgacaaatcaatgtctcttttg |
243 |
Q |
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| T |
36960621 |
acaagtgctgagaagcaggcctcttgacaaatcaatgtctcttttg |
36960666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 36953175 - 36953255
Alignment:
| Q |
152 |
tttttcttttaccttcaacatcaaatgtaaaaactaagggcacaacacaagtgctgagaagccggcctcttgacaaatcaatgtct |
237 |
Q |
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||||||||| |||||||| |||||| ||||| |||||| || ||||||||||||||| |||||||| |||||||||||||| |
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| T |
36953175 |
tttttctttatccttcaacgtcaaatttaaaacctaagg-----acgcaagtgctgagaagcaggcctcttaacaaatcaatgtct |
36953255 |
T |
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