View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_low_3 (Length: 521)
Name: NF6355_low_3
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 6868357 - 6868729
Alignment:
| Q |
19 |
ggagaatcataactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtggttttgat |
118 |
Q |
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| T |
6868357 |
ggagaatcataactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtgggtttgat |
6868456 |
T |
|
| Q |
119 |
ggagaagtggttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccatagagataatttgtttggt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
6868457 |
ggagaagtggttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccatagaggaaattggtttggt |
6868556 |
T |
|
| Q |
219 |
ggagtatgcaaagtgattatgtggtgtgtttaataatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagttt |
318 |
Q |
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| T |
6868557 |
ggagtatgcaaagtgattatgtggtgtgtttaataatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagttt |
6868656 |
T |
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| Q |
319 |
gtgtggggacccacccgttttggcataaaaatggctctgaggaaaagaatcaaatcaaataaaataacatacct |
392 |
Q |
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| T |
6868657 |
gtgtggggacccacccgttttggc-taaaaatggctctgaggaaaagaatcaaatcaaatcaaataacatacct |
6868729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 433 - 513
Target Start/End: Original strand, 6868728 - 6868808
Alignment:
| Q |
433 |
ctccagaacctgttgttattgttaacgcactaaagattgaatcttcactattgggtaagcaatatattcgattttcatctc |
513 |
Q |
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| T |
6868728 |
ctccagaacctgttgttattgttaacgcactaaagattgaatcttcactattgggtaagcaatatattcgattttgatctc |
6868808 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 8e-50; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 14080394 - 14080228
Alignment:
| Q |
28 |
taactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtggttttgatggagaagtg |
127 |
Q |
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||||||||||| |||||||||| |||||| ||||||||| |||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||| |
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| T |
14080394 |
taactaacgtctgaacggattttaacggt---tttggataacggtgatttttgtttgggggtttttgagattggga---agtgggtttgatggagaagtg |
14080301 |
T |
|
| Q |
128 |
gttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccat |
200 |
Q |
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| T |
14080300 |
ctttttttgagaagctggtttgagtgggttgtgggtgtaaggaagaaacgctgccgttgagaagagaagccat |
14080228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 14390422 - 14390256
Alignment:
| Q |
28 |
taactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtggttttgatggagaagtg |
127 |
Q |
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| T |
14390422 |
taactaacgtctgaacggattttaacggt---tttggataacggtgatttttgtttgggggtttttgagattggga---agtgggtttgatggagaagtg |
14390329 |
T |
|
| Q |
128 |
gttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccat |
200 |
Q |
| |
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|||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
14390328 |
ctttttttgagaagctggtttgagtgggttgtgggtgtaaggaagaaacgctgccgttgagaagagaagccat |
14390256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 240 - 354
Target Start/End: Complemental strand, 14080121 - 14080018
Alignment:
| Q |
240 |
tggtgtgtttaataatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgtttt |
339 |
Q |
| |
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||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
14080121 |
tggtgtgtttaataatggttgtgtataagttcaacc---cttatcatgtcgtgtgtgtcacac----acgtactagtttgtgtgggg----acccgtttt |
14080033 |
T |
|
| Q |
340 |
ggcataaaaatggct |
354 |
Q |
| |
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||||| ||||||||| |
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| T |
14080032 |
ggcatcaaaatggct |
14080018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 240 - 354
Target Start/End: Complemental strand, 14390149 - 14390046
Alignment:
| Q |
240 |
tggtgtgtttaataatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgtttt |
339 |
Q |
| |
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||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
14390149 |
tggtgtgtttaataatggttgtgtataagttcaacc---cttatcatgtcgtgtgtgtcacac----acgtactagtttgtgtgggg----acccgtttt |
14390061 |
T |
|
| Q |
340 |
ggcataaaaatggct |
354 |
Q |
| |
|
||||| ||||||||| |
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| T |
14390060 |
ggcatcaaaatggct |
14390046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 360 - 507
Target Start/End: Complemental strand, 47150072 - 47149928
Alignment:
| Q |
360 |
gaaaagaatcaaatcaaataaaataacatacctgagctagaaacgttggtggttccagatgaataagctatttctccagaacctgttgttattgttaacg |
459 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||| ||||||| | |
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| T |
47150072 |
gaaatgaatcaaatcaaagaaaataacatacctgagctagaaacgttagtgtttccagatgaagaagctatttctccagaacccattg---ttgttaatg |
47149976 |
T |
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| Q |
460 |
cactaaagattgaatcttcactattgggtaagcaatatattcgatttt |
507 |
Q |
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||||||| |||||||||| |||||||| |||||||||| ||||||||| |
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| T |
47149975 |
cactaaaaattgaatctttactattggataagcaatatcttcgatttt |
47149928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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