View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_low_30 (Length: 256)
Name: NF6355_low_30
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 12196868 - 12197017
Alignment:
| Q |
22 |
ctggctatagtggttgactcttcatctaagatttcttcttcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacct |
121 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12196868 |
ctggctatagtggttgactcttcatctatgatttcttcatcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacct |
12196967 |
T |
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| Q |
122 |
gcttctcagagacactgcacttgtttgcagtacaatcccaatattcatct |
171 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12196968 |
ccttctcagagacactgcacttatttgcagtacaatcccaatattcatct |
12197017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 33684201 - 33683978
Alignment:
| Q |
22 |
ctggctatagtggttgactcttcatctaagatttcttcttcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacct |
121 |
Q |
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|||||||||||||||| ||| |||||||| |||| ||||| | |||| ||||||| ||||| |||||||||| |||| ||||||||||||||||||| | |
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| T |
33684201 |
ctggctatagtggttggctcctcatctaatatttattctttaatagcttcttcattgatggtaagctcatcagtttctttattatcttcaatgataactt |
33684102 |
T |
|
| Q |
122 |
gcttctcagagacactgcacttgtttgcagtacaatcccaatattcatcttctaagactttcacatacctactgatagcaattttcttagattgtggatc |
221 |
Q |
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| T |
33684101 |
gcttctcagacacactgcattcatttgaattccaatcccaatattcttcctctaaaacattcacatctctactaattgcaattttcttagagtgtgaatc |
33684002 |
T |
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| Q |
222 |
aagcaatctatatgctctagtatt |
245 |
Q |
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|| |||||||||||||| |||||| |
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| T |
33684001 |
aaacaatctatatgctccagtatt |
33683978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 33701255 - 33701032
Alignment:
| Q |
22 |
ctggctatagtggttgactcttcatctaagatttcttcttcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacct |
121 |
Q |
| |
|
|||||||||||||||| ||| |||||||| |||| ||||| | |||| ||||||| ||||| |||||||||| |||| ||||||||||||||||||| | |
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| T |
33701255 |
ctggctatagtggttggctcctcatctaatatttattctttaatagcttcttcattgatggtaagctcatcagtttctttattatcttcaatgataactt |
33701156 |
T |
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| Q |
122 |
gcttctcagagacactgcacttgtttgcagtacaatcccaatattcatcttctaagactttcacatacctactgatagcaattttcttagattgtggatc |
221 |
Q |
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|||||||||| |||||||| | |||| | | |||||||||||||| || ||||| || ||||||| ||||| || |||||||||||||| |||| ||| |
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| T |
33701155 |
gcttctcagacacactgcattcatttgaattccaatcccaatattcttcctctaaaacattcacatctctactaattgcaattttcttagagtgtgaatc |
33701056 |
T |
|
| Q |
222 |
aagcaatctatatgctctagtatt |
245 |
Q |
| |
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|| |||||||||||||| |||||| |
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| T |
33701055 |
aaacaatctatatgctccagtatt |
33701032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 238
Target Start/End: Complemental strand, 14639480 - 14639327
Alignment:
| Q |
85 |
agctcatcagattctctattatcttcaatgataacctgcttctcagagacactgcacttgtttgcagtacaatcccaatattcatcttctaagactttca |
184 |
Q |
| |
|
||||||||||| || | |||| |||||||||||| | || ||| | |||||||| | |||| | | |||||||| ||||| || ||||| ||||||| |
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| T |
14639480 |
agctcatcagactccttcttattttcaatgataacatttttttcatacacactgcattcatttgaattccaatcccagtattcttcctctaacactttca |
14639381 |
T |
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| Q |
185 |
catacctactgatagcaattttcttagattgtggatcaagcaatctatatgctc |
238 |
Q |
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||| ||| | || | ||| |||||||| ||| |||||||||||||||| |||| |
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| T |
14639380 |
catctctaattattgaaatcttcttagagtgtagatcaagcaatctataagctc |
14639327 |
T |
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