View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_low_31 (Length: 251)
Name: NF6355_low_31
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_low_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 5261344 - 5261584
Alignment:
| Q |
11 |
caaagggtaaagaagaaacaccattatccccaagatctttatgcacaaaaccaaatttacgcataacttgattatcagcaaaattaagtgcttttttcat |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5261344 |
caaaaggtaaagaagaaacaccattatccccaagatctttatgcacaaaaccaaatttacgcataacttgattatcagcaaaattaagtgcttttttcat |
5261443 |
T |
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| Q |
111 |
cccattccaacaagcatcagcagtgtacatttcattatactttccactgcatggttgacaacctgtaaaatgtgtaacaaatggtcttctccaacttcct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5261444 |
cccattccaacaagcatcagcagtgtacatttcattatactttccactgcatggttgacaacctgtaaaatgtgtaacaaatggtcttctccaacttcct |
5261543 |
T |
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| Q |
211 |
ttaccataaccagcatctttcaaatattcttctctaataac |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
5261544 |
ttaccataaccagcatctttcaaatattcttctctaataac |
5261584 |
T |
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