View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_low_4 (Length: 463)
Name: NF6355_low_4
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 46837346 - 46837774
Alignment:
| Q |
19 |
ttatattcaacaactaacagagaattagtttgtctttgaaaatgactactggtggacaaaaaattccccctcagaagcaagacacacaacctggcaaaga |
118 |
Q |
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| T |
46837346 |
ttatattcaacaactaacagagaattagtttatctttgaaaatgactactggtggacaaaaaattccccctcagaagcaagacacacaacctggcaaaga |
46837445 |
T |
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| Q |
119 |
acatgccatgaatccaacacctcaattcacttgccctgattacaagccagcaaataagcttcaagtatacatatcatatcacagtgtttttacattaaaa |
218 |
Q |
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| T |
46837446 |
acatgccatgaatccaacacctcaattcacttgccctgattacaagccagcaaataagcttcaagtatacatatcatatcacagtgtttttacattaaaa |
46837545 |
T |
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| Q |
219 |
taaatttatacaataattcgcttatttaatcttttttagtgaaaaaattaataacaagttctctctcagggaaagatagcagtggtgactggaggtgact |
318 |
Q |
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| T |
46837546 |
taaatttatacaataattcgcttatttaatcttttttagtgaaaaaattaataataagttctctctcagggaaagatagcagtggtgactggaggtgact |
46837645 |
T |
|
| Q |
319 |
ctggaataggacgtgcagtatgcaacttgtttgcattagaaggtgccactgtgattttcacatatgtgaaggggcatgaagacaaggacgcaagagacac |
418 |
Q |
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| T |
46837646 |
ctggaataggacgtgcagtatgcaacttgtttgcattagaaggtgccactgtgattttcacatatgtgaaggggcatgaagacaaggacgcaagagacac |
46837745 |
T |
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| Q |
419 |
acttgatatgttaaaaatggctaagactg |
447 |
Q |
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| T |
46837746 |
acttgatatgttaaaaatggctaagactg |
46837774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 36833517 - 36833426
Alignment:
| Q |
96 |
caagacacacaacctggcaaagaacatgccatgaatccaacacctcaattcacttgccctgattacaagccagcaaataagcttcaagtata |
187 |
Q |
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| T |
36833517 |
caagacacacaacctgggaaggaacatgttatggatccactacctcaattcacttgccctgactacaagccatcaaacaaacttcaagtata |
36833426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 432
Target Start/End: Complemental strand, 36832956 - 36832833
Alignment:
| Q |
309 |
ggaggtgactctggaataggacgtgcagtatgcaacttgtttgcattagaaggtgccactgtgattttcacatatgtgaaggggcatgaagacaaggacg |
408 |
Q |
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| T |
36832956 |
ggaggtgactctggaattggacgagccgtatgcaatttattttccttagaaggtgctacggttgcattcacatatgtaaagggtgatgaagacaaggacg |
36832857 |
T |
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| Q |
409 |
caagagacacacttgatatgttaa |
432 |
Q |
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||| |||||||| || ||||||| |
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| T |
36832856 |
caaaggacacactagaaatgttaa |
36832833 |
T |
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