View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_low_42 (Length: 221)
Name: NF6355_low_42
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_low_42 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44689173 - 44689393
Alignment:
| Q |
1 |
ctctttcctagaagacttggtannnnnnncttttcaattccttcaattgctcttgtttctcacccctcatatgtgtaannnnnnncaatgaatcttctat |
100 |
Q |
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| T |
44689173 |
ctctttcctagaagacttggtatttttttcttttcaattccttcaattgctcttgtttctcacccctcatatgtgtaatttttttcaatgaatcttctat |
44689272 |
T |
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| Q |
101 |
cactttcttcaacacttggcgatgaaaaaacaaagctgagttgtctattctttttcgttgtatcataatttgaatgaaagggatcctctgcattggttta |
200 |
Q |
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| T |
44689273 |
cactttcttcaacacttggcaatgaaaaaacaaagctgagttgtctattctttttcgttgtatcataatttgaatgaaagggatcctctgcattggtttg |
44689372 |
T |
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| Q |
201 |
ttaaattgctcatactatgtt |
221 |
Q |
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| T |
44689373 |
ttaaattgctcatactatgtt |
44689393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 44680134 - 44680233
Alignment:
| Q |
122 |
atgaaaaaacaaagctgagttgtctattctttttcgttgtatcataatttgaatgaaagggatcctctgcattggtttattaaattgctcatactatgtt |
221 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
44680134 |
atgaaaaaacaaagctgagttgtctattctttttagttgtatcataatttgaatgaaagggatcatgtgcattggtttattaaattgctcatactatgtt |
44680233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 41983953 - 41983907
Alignment:
| Q |
158 |
ttgtatcataatttgaatgaaagggatcctctgcattggtttattaaa |
205 |
Q |
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| T |
41983953 |
ttgtatcatcatttgaatgaaagg-atcctgtgcattggtttattaaa |
41983907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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