View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_low_6 (Length: 455)
Name: NF6355_low_6
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 54 - 427
Target Start/End: Complemental strand, 25307156 - 25306780
Alignment:
| Q |
54 |
tacattgaatatcttattaaagggtttgatcctttttaagggatgataatctattataatattatcctcacatgaataatca---aatccaaactaattt |
150 |
Q |
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| T |
25307156 |
tacattgaatatcttattaaagggtttgatcttttttaagggacgataatctattataatattatcctcacatgaataatcagtaaatccaaactaattt |
25307057 |
T |
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| Q |
151 |
actactttttaaatttaaatggtttgtaacaactactttatgtttgttttttatctttgatttatataggaagaaacaatgttactcgttctaaggttcc |
250 |
Q |
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| T |
25307056 |
actactttttaaatttaaatggtttgtaacaactactttatgtttgttttttatctttgatttatataggaagaaacaatgttactcgttctaaggttcc |
25306957 |
T |
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| Q |
251 |
tgaaacagaaaagaggttcatgtgttggcctccagataacaagtcattggtttcagaatttctaaatgctaaacagcccaacattcaagtaagttatttt |
350 |
Q |
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| T |
25306956 |
tgaaacagaaaagaggttcatgtgttggcctccatataacaagtcattggtttcagaatttctaaatgctaaacaacccaacattcaagtaagttatgtt |
25306857 |
T |
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| Q |
351 |
atatatattttttcaaggataagtgaaaatctataaacatacttaggctccttgatgaaaatcaatcttaacagtgg |
427 |
Q |
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| T |
25306856 |
ttattttttttttcaagaataagtgaaaatctataaacatacttaggctccttaatgaaaatcaatcttaacagtgg |
25306780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 135 - 389
Target Start/End: Complemental strand, 25278990 - 25278746
Alignment:
| Q |
135 |
aaatccaaactaatttactacttttt--------aaatttaaatggtttgtaacaactactttatgtttgtttttta-tctttgatttatataggaagaa |
225 |
Q |
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| T |
25278990 |
aaatccaacctaatttactacttttttttaaaaaaaaattaaatggtttgtaacaactacttt--gtttgtttttttgtctttcatctatataggaagaa |
25278893 |
T |
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| Q |
226 |
acaatgttactcgttctaaggttcctgaaacagaaaagaggttcatgtgttggcctccagataacaagtcattggtttcagaatttctaaatgctaaaca |
325 |
Q |
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| T |
25278892 |
acaatgttgctcattctaaggttcttgaaacataaaagaggttcatg--------------taataagtcattggtttcagaatttcaaaatgctaaaaa |
25278807 |
T |
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| Q |
326 |
gcccaacattcaagtaagttattttatatatattttttcaaggataagtgaaaatctataaaca |
389 |
Q |
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| T |
25278806 |
gcccaacattcaagtaagttatgttttata---tttttcaagaataagtcaaaatctataaaca |
25278746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 25279245 - 25279148
Alignment:
| Q |
35 |
taacctatatttgaggatctacattgaatatcttattaaagggtttgatcctttttaagggatgataatctattataatattatcctcacatgaataa |
132 |
Q |
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| T |
25279245 |
taacctatatttgaggatctaaattaaatatctcattaaagagtttgatcttttttaagggatgataatcaattataacatcaacctcacatgaataa |
25279148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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