View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6355_low_8 (Length: 411)
Name: NF6355_low_8
Description: NF6355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6355_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 4543219 - 4542839
Alignment:
| Q |
19 |
aagagttcctaagattgcttttatgtttcttactaaaggaccattgcctcttgcaccagtttgggagaggtttttgaaagggcatgagagtcgttatagt |
118 |
Q |
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| T |
4543219 |
aagagttcctaagattgcttttatgtttcttactaaaggaccattgcctcttgcaccagtttgggagaggtttttgaaagggcatgagagtcgttatagt |
4543120 |
T |
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| Q |
119 |
gtgtatgttcatccaactccttcatatcaagctcattttcctccttcatctgttttttataagaggcaaatccctagtcaggtatgtatatttcgaactt |
218 |
Q |
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| T |
4543119 |
gtgtatgttcatccaactccttcatatcaagctcattttcctccttcatctgttttttataagaggcaaatccctagtcaggtatgtatatttcgaactt |
4543020 |
T |
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| Q |
219 |
atgtatatatttatgaaacttcatttgtagatgctaaacttgatcgcaagttactaatgtttaattggtgctaattttgggttatagattgaggttgata |
318 |
Q |
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| T |
4543019 |
atgtatatatttatgaaacttcatttgtagatgctaaacttgatcgcaagttaccaatgtttaattggtgctaattttgggttatagattgaggatgata |
4542920 |
T |
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| Q |
319 |
tccactttattatggttgtatcttactttctgatttctgttctggtagtgatgttgattttgttcgtcattgttacttgat |
399 |
Q |
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| T |
4542919 |
tccactttattatggttgtatcttactttctgatttctgttctggtagtgatgttgattttgttcgtcattgttacttgat |
4542839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 25520046 - 25520002
Alignment:
| Q |
333 |
gttgtatcttactttctgatttctgttctggtagtgatgttgatt |
377 |
Q |
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| T |
25520046 |
gttgtatcttactttctgatttccgttctggtggtgatgttgatt |
25520002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 379
Target Start/End: Original strand, 36832829 - 36832907
Alignment:
| Q |
297 |
gggttatagattgaggttgatatccactttattatggttgtatcttactttctgatttctgttctggtagtgatgttgatttt |
379 |
Q |
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||||||| ||||| | |||||| |||||||||| || || |||||||| ||||||||||||||| |||||||||||||| |
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| T |
36832829 |
gggttattgattgtgcctgatatgcactttattagggatgcatcttact----gatttctgttctggtggtgatgttgatttt |
36832907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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