View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6356_high_1 (Length: 540)
Name: NF6356_high_1
Description: NF6356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6356_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 170 - 460
Target Start/End: Complemental strand, 3696112 - 3695821
Alignment:
| Q |
170 |
atagtgtgaaaaacatattctcactgctagtagtgtcatgtatgaaatttgtagtattaaaatgtcccactgatgtcatattttatgttaattccatccg |
269 |
Q |
| |
|
|||||||||| |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
3696112 |
atagtgtgaacaacaaattctctcagctagtagtgtcatgtatgaaatttgtagtattaaaatgtcccactgatgtcatattttat--tgattccatccg |
3696015 |
T |
|
| Q |
270 |
caaaacgataaaattctttgattccttgcttttggtgaatattgaatagaataagttgtttagtctttttggtccaaagtaaagaagttctctttgtttc |
369 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3696014 |
caaaaagataaaattctttgattccttgcttttggtgaatattgaatagaataagttgtttagtctttttggtccaaagtaaagaagttctttttgtttc |
3695915 |
T |
|
| Q |
370 |
ttgttaccaggcttaaattaaatacaaggaaaataagagaattggcagca---cacagcagcattcatggcagaagcagaccggtctcaactcc |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |||||| |
|
|
| T |
3695914 |
ttgttaccaggcttaaattaaatacaaggaaaataagagaattggcagcatacaacagcagcattcatagcagaagcagactggtctaaactcc |
3695821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 159 - 360
Target Start/End: Complemental strand, 3684849 - 3684648
Alignment:
| Q |
159 |
gtgcatgaactatagtgtgaaaaacatattctcactgctagtagtgtcatgtatgaaatttgtagtattaaaatgtcccactgatgtcatattttatgtt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||||||| |||| ||||||||| |
|
|
| T |
3684849 |
gtgcatgaactatagtgtgaaaaacatattctcactgctagtagtgtcatgtgtgaattttgtagtgttaaaatgtctcactgatatcatgttttatgtt |
3684750 |
T |
|
| Q |
259 |
aattccatccgcaaaacgataaaattctttgattccttgcttttggtgaatattgaatagaataagttgtttagtctttttggtccaaagtaaagaagtt |
358 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
3684749 |
gattccatccgcaaaaagataaaattctttgattccttgcttttggtgaatattgaatagaataagttgtttagtatttttggtgcaaagtaaagaagtt |
3684650 |
T |
|
| Q |
359 |
ct |
360 |
Q |
| |
|
|| |
|
|
| T |
3684649 |
ct |
3684648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 354 - 525
Target Start/End: Complemental strand, 3684614 - 3684443
Alignment:
| Q |
354 |
aagttctctttgtttcttgttaccaggcttaaattaaatacaaggaaaataagagaattggcagcacacagcagcattcatggcagaagcagaccggtct |
453 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3684614 |
aagttctttttgtttcttgttaccaggcttaaattaaaaacaaggaaaagaagagaattggcagcacacagcagcattcatggcagaagcagaccggtct |
3684515 |
T |
|
| Q |
454 |
caactccatggacttcaccacgggagaataatgaacccaacaatcgtggctactttgactatggctacatgt |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
3684514 |
caactccatggacttcaccacgggagaataatgaacccaacaatcgtggctactatgactatgggtacatgt |
3684443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University